Table 1.
Respiratory viruses targeted by TruSeq RVP RNA access sequencing
| Respiratory virus (34) | Genome size | Type | Target genome sequences |
|---|---|---|---|
| Respiratory syncytial virus B (S2) | 15,190 | (−)ssRNA | NC_001803.1 |
| Respiratory syncytial virus A | 15,225 | (−)ssRNA | AY353550 |
| Influenza A (H9N2) | 13,500 | (−)ssRNA | NC_004910.1 NC_004911.1 NC_004912.1 NC_004908.1 NC_004905.2 NC_004909.1 NC_004907.1 NC_004906.1 |
| Influenza A (H2N2) | 13,460 | (−)ssRNA | NC_007378.1 NC_007375.1 NC_007376.1 NC_007374.1 NC_007381.1 NC_007382.1 NC_007377.1 NC_007380.1 |
| Influenza A (H3N2) | 13,630 | (−)ssRNA | NC_007373.1 NC_007372.1 NC_007371.1 NC_007366.1 NC_007369.1 NC_007368.1 NC_007367.1 NC_007370.1 |
| Influenza A (H1N1) | 13,590 | (−)ssRNA | NC_002023.1 NC_002021.1 NC_002022.1 NC_002017.1 NC_002019.1 NC_002018.1 NC_002016.1 NC_002020.1 |
| Influenza A (H5N1) | 13,590 | (−)ssRNA | NC_007357.1 NC_007358.1 NC_007359.1 NC_007362.1 NC_007360.1 NC_007361.1 NC_007363.1 NC_007364.1 |
| Influenza A (H7N9) | 13,590 | (−)ssRNA | KC885955 KC885956 KC885957 KC885958 KC885959 KC885960 KC885961 KC885962 |
| Influenza B | 14,450 | (−)ssRNA | NC_002204.1 NC_002205.1 NC_002206.1 NC_002207.1 NC_002208.1 NC_002209.1 NC_002210.1 NC_002211.1 |
| Parainfluenza 1 | 15,600 | (−)ssRNA | NC_003461.1 |
| Parainfluenza 2 | 15,650 | (−)ssRNA | NC_003443.1 |
| Parainfluenza 3 | 15,460 | (−)ssRNA | NC_001796.2 |
| Parainfluenza 4 | 17,050 | (−)ssRNA | NC_021928.1 |
| Human metapneumovirus | 13,340 | (−)ssRNA | NC_004148.2 |
| Adenovirus C | 35,937 | dsDNA | NC_001405.1 |
| Adenovirus B | 35,343 | dsDNA | NC_011203.1 |
| Adenovirus E | 35,994 | dsDNA | NC_003266.2 |
| Human coronavirus HKU1 | 29,930 | (+)ssRNA | NC_006577.2 |
| Human coronavirus NL63 | 27,550 | (+)ssRNA | NC_005831.2 |
| Human coronavirus 229E | 27,320 | (+)ssRNA | NC_002645.1 |
| Human coronavirus OC43 | 30,738 | (+)ssRNA | AY391777.1 |
| Rhinovirus A | 7150 | (+)ssRNA | NC_001617.1 |
| Rhinovirus C | 7100 | (+)ssRNA | NC_009996.1 |
| Rhinovirus B14 | 7210 | (+)ssRNA | NC_001490.1 |
| Human Bocavirus 1 | 5299 | ssDNA | NC_007455.1 |
| Human Bocavirus 2 | 5196 | ssDNA | NC_012042.1 |
| Human Bocavirus 3 | 5242 | ssDNA | NC_012564.1 |
| Human Bocavirus 4 | 5104 | ssDNA | NC_012729.2 |
| KI polyomavirus | 5040 | dsDNA | NC_009238.1 |
| WU polyomavirus | 5229 | dsDNA | NC_009539.1 |
| HPeV type 1 | 7296 | (+)ssRNA | FM242866.1 |
| HPeV type 6 | 7347 | (+)ssRNA | AB252582.1 |
| Human enterovirus C104 | 7408 | (+)ssRNA | AB686524.1 |
| Human enterovirus C109 | 7354 | (+)ssRNA | GQ865517.1 |