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. 2020 Mar 31;5(14):8312–8320. doi: 10.1021/acsomega.0c00772

Table 3. Docking Simulation Results with Docking Score Energy (DS) and Root-Mean-Square Deviation (RMSD) between the Title Compounds and PDB6LU7 Protein of SARS-CoV-2.

T2 = T1 > T5 > T4 > T11 > T15 > T8 > T16 > T9 > T12 > T13 > T3 > T6 > T7 > T10 > T14 > T17
compound symbol (compound-protein) DS (kcal·mol–1) RMSD (Å) interaction with amino acid
allyl disulfide T1-SARS-CoV-2 –15.32 1.35 Gly 143 (2.59 Å), Asn 142 (2.92 Å), Leu 141 (2.94 Å), Cys 145 (2.98 Å), Ser 144 (3.15 Å), His 163 (2.95 Å)
allyl trisulfide T2-SARS-CoV-2 –15.02 0.66 Gly 143 (3.93 Å; 2.79 Å), Asn 142 (2.87 Å; 2.67 Å), Cys 145 (3.25 Å; 3.63 Å), Ser 144 (3.06 Å)
allyl (E)-1-propenyl disulfide T3-SARS-CoV-2 –13.25 1.49 Leu 141 (2.98 Å), Ser 144 (3.07 Å)
allyl methyl trisulfide T4-SARS-CoV-2 –14.36 1.37 Gly 143 (3.69 Å), Asn 142 (2.81 Å), Cys 145 (3.61 Å; 3.12 Å), Ser 144 (2.96 Å)
diallyl tetrasulfide T5-SARS-CoV-2 –14.47 0.94 Gly 143 (2.88 Å; 2.98 Å), Asn 142 (2.10 Å), Cys 145 (3.94 Å; 3.56 Å), Ser 144 (3.14 Å)
1,2-dithiole T6-SARS-CoV-2 –13.21 2.30 Asn 142 (3.75 Å), Cys 145 (3.75 Å)
allyl (Z)-1-propenyl disulfide T7-SARS-CoV-2 –12.60 1.72 Gly 143 (3.32 Å), Leu 141 (3.62 Å)
2-vinyl-4H-1,3-dithiine T8-SARS-CoV-2 –14.04 4.35 Gly 143 (2.73 Å), Asn 142 (3.82 Å), Cys 145 (3.11 Å), Ser 144 (3.02 Å)
3-vinyl-1,2-dithiacyclohex-4-ene T9-SARS-CoV-2 –13.83 1.05 Glu 166 (2.86 Å), Met 165 (2.88 Å), Cis 145 (2.13 Å)
carvone T10-SARS-CoV-2 –12.36 1.62 His 163 (2.15 Å)
trisulfide, 2-propenyl propyl T11-SARS-CoV-2 –14.36 1.37 Gly 143 (2.62 Å; 2.81 Å), Asn 142 (2.85 Å), Cys 145 (3.15 Å; 3.50 Å), Ser 144 (2.87 Å), His 163 (2.97 Å)
methyl allyl disulfide T12-SARS-CoV-2 –13.56 1.51 Cys 145 (2.43 Å), Ser 144 (2.82 Å), His 163 (2.65 Å)
diacetonalcohol T13-SARS-CoV-2 –13.26 1.41 Cys 145 (2.93 Å), Ser 144 (2.26 Å)
trisulfide, (1E)-1-propenyl 2-propenyl T14-SARS-CoV-2 –12.00 2.12 Leu 141 (3.32 Å), Ser 144 (2.39 Å)
allyl sulfide T15-SARS-CoV-2 –14.24 1.20 Gly 143 (2.75 Å), Asn 142 (2.75 Å), Leu 141 (3.56 Å), Cys 145 (3.47 Å), Ser 144 (3.32 Å)
1-propenyl methyl disulfide T16-SARS-CoV-2 –13.84 0.91 Gly 143 (2.89 Å), Asn 142 (3.88 Å), Cys 145 (2.83 Å), Ser 144 (2.80 Å)
trisulfide, (1Z)-1-propenyl 2-propenyl T17-SARS-CoV-2 –11.68 3.60 Leu 141 (3.38 Å)