| Gene models |
Gene structure, introns, exons, UTRs,
alternative transcripts). Includes a gene model graphic and summary of
supporting transcriptomic data. |
| Annotation, curation and identifiers |
User comments, notes from curators, community
annotation projects, alternative product descriptions, gene names,
synonyms and previous identifiers. |
| Link outs |
Links to other databases and resources that
serve as alternative or specialized sources for additional information
about our gene (ex: Entrez Gene, UniProtKB, PDB, GeneDB,
Ensembl…) |
| Genomic Location |
Coordinates of the gene at the sequence level
(chromosome, scaffold or contig, nucleotide). Links to the Genome
Browser centered in the gene of interest. |
| Literature |
Publications containing useful information
about the gene. Either automatically retrieved from GenBank records or
manually curated. |
| Taxonomy |
Classification of the organism following the
NCBI taxonomy. |
| Orthology and synteny |
Ortholog group assignments as predicted by
OrthoMCL This section also contains a tool for aligning the gene
sequence against up to 15 of the genomes included in the database. |
| Phenotype |
Collection of mutant phenotypes, manually
curated from publications or inferred from high-throughput phenotyping
experiments. |
| Genetic Variation |
Graphic summary of the SNPs detected in this
region, with links to our genomic variation GBrowser tracks. Alignment
tool for explore differences between isolates |
| Transcriptomics |
Transcript expression datasets are arranged in
searchable data tables, with expandable rows. Each dataset includes
expression data in tabular and graphical format, as well as coverage
plots for RNA sequence data sets. |
| Sequences |
Data table containing genomic, mRNA and
protein sequences for each transcript. |
| Sequence analysis |
An interactive graphic summary of BLAT hits
against the GenBank non-redundant protein sequence database (NRDB). |
| Structure analysis |
3D structure predictions and similar Protein
Data Bank (PDB) chains. |
| Protein features and properties |
Protein domains predicted for this gene,
displayed both in a graphical representation and in data tables |
| Function prediction |
Complete Gene Ontology annotations plus enzyme
classification numbers, with links to EC numbers and GO term
descriptions and publications. |
| Pathways and interactions |
Collection of manually curated and
computationally predicted metabolic pathways and protein
interactions. |
| Proteomics |
Data tables and graphic summaries of proteomic
datasets (Mass Spec-based expression evidence and post translation
modification datasets). |
| Immunology |
Predicted epitopes from The Immune Epitope
Database (IEDB), and host response datasets, that are organized in
expandable data tables, similar to the proteomics and transcriptomics
tables. |
