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. Author manuscript; available in PMC: 2020 Apr 3.
Published in final edited form as: Methods Mol Biol. 2018 Jan 1;1757:69–113. doi: 10.1007/978-1-4939-7737-6_5

Table 5. Tracks used in the ToxoDB Data Visualization in GBrowse Example.

Track Title Category
Annotated Transcripts (with UTRs in gray when available) Gene Models, Transcripts
RNA-Seq Unified Splice Site Junctions (filtered) Gene Models, Introns
RNA-Seq Unified Splice Site Junctions (inclusive) Gene Models, Introns
Annotated Transcripts w/ CRAIG UTR Prediction Gene Models, Splice Sites
CRAIG de novo Gene Model Prediction Gene Models, Splice Sites
Tachyzoite Transcriptome 3 and 4 days post-infection (VEG NcLIV) mRNAseq Coverage aligned to T. gondii ME49 (Reid et al.) Transcriptomics, RNA-Seq, T. gondii ME49, Linear Scale
Tachyzoite Transcriptome Time Series (ME49) Strand Specific mRNA seq Coverage aligned to T. gondii ME49 (Gregory) (linear scale) Transcriptomics, RNA-Seq, T. gondii ME49, Linear Scale
Transcriptomes of Cat Enteroepithelial Stages (CZ-H3) Strand Specific mRNAseq Coverage aligned to T. gondii ME49 (Hehl Lab) Transcriptomics, RNA-Seq, T. gondii ME49, Linear Scale
EST Alignments Sequence analysis, BLAT and Blast Alignments