Table 2.
The lentivirus C-terminal helices
| Virus | Add dist2 | Sequence | Likelihoods | |||
|---|---|---|---|---|---|---|
| L | P | C | M | |||
| abcdefgabcdefgabcdefgabcdefgabcdef | ||||||
| HIV-1 | 47 | WMEWDREINNYTSLIHSLIEESQNQQEKNEQELL | 9 | 3 | 8 | 1 |
| SIV | 43 | WQEWERKVDFLEANITALLEEAQIQQEKNMYELQ | 9 | 1 | 9 | 5 |
| Visna | 47 | WQQWEEEIEQHEANLSQLLREAALQVHIAQRDAQ | 9 | 0 | 8 | 5 |
| CAEV | 47 | WQQWERELQGYDGNLTMLLRESARQTQLAEEQVR | 9 | 0 | 7 | 0 |
| FIV | 50 | LGEWYNQTKELQQKFYEIIMNIEQNNVQVKKGLQ | 9 | 0 | 4 | 0 |
| EIAV | 44 | WDDWVSKMEDLNQEILTTLHGARNNLAQSMITFN | 0 | 0 | 0 | 0 |
| BIV | 44 | WSDLQDEYDKIEEKILKIRVDWLNSSLSDTQDTF | 0 | 0 | 0 | 0 |
Add dist2 column is the distance from the end of the region in Table 1 to the start of this region. The C34 fragment of HIV-1 gp41 (Chan et al., 1997) is shown, and the other lentivirus sequences are aligned to it.