Table 4.
Paramyxovirus N-terminal helix
| Virus | Add dist | Sequence | Likelihoods | |||
|---|---|---|---|---|---|---|
| L | P | C | M | |||
| Paramyx | gabcdefgabcdefgabcdefgabcdefgabcdefgabcdefgabc | |||||
| BPIV-3 | 27 | EAKQAKSDIEKLKEAIRDTNKAVQSIQSSVGNLIVAVKSVQDYVNN | 9 | 8 | 9 | 8 |
| HPIV-3 | 27 | EAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIKSVQDYVNK | 9 | 8 | 9 | 8 |
| HPIV-1 | 30 | EAREARKDIALIKDSIIKTHNSVELIQRGIGEQIIALKTLQDFVNN | 7 | 0 | 1 | 0 |
| Sendai | 30 | EAREAKRDIALIKESMTKTHKSIELLQNAVGEQILALKTLQDFVND | 9 | 4 | 9 | 6 |
| Morbilli | ||||||
| CDV | 27 | QSNLNAQAIQSLRTSLEQSNKAIEEIREATQETVIAVQGVQDYVNN | 9 | 6 | 7 | 7 |
| Measles | 27 | QSMLNSQAIDNLRASLETTNQAIEAIRQAGQEMILAVQGVQDYINN | 9 | 0 | 4 | 3 |
| PPRV | 27 | QSLMNSQAIESLKTSLEKSNQAIEEIRLANKETILAVQGVQDYINN | 9 | 6 | 8 | 5 |
| PDV | 27 | QSNLNAQAIQSLRASLEQSNKAIDEVRQASQNIIIAVQGVQDYVNN | 9 | 5 | 7 | 8 |
| RPV | 27 | QSMMNSQAIESLKASLETTNQAIEEIRQAGQEMVLAVQGVQDYINN | 9 | 0 | 5 | 7 |
| Rubula | ||||||
| HPIV-2 | 27 | KANANAAAINNLASSIQSTNKAVSDVIDASRTIATAVQAIQDHING | 9 | 0 | 1 | 0 |
| HPIV-4a | 27 | KAQENAKLILTLKKAATETNEAVRDLANSNKIVVKMISAIQNQINT | 9 | 2 | 6 | 2 |
| HPIV-4b | 27 | KAQENAQLILTLKKAAKETNDAVRDLTKSNKIVARMISAIQNQINT | 9 | 5 | 3 | 2 |
| SV5 | 27 | KANENAAAILNLKNAIQKTNAAVADVVQATQSLGTAVQAVQDHINS | 9 | 4 | 2 | 1 |
| PRV | 27 | RANKNAEKVEQLSQALGETNAAISDLIDATKNLGFAVQAIQNQINT | 9 | 5 | 4 | 5 |
| Mumps | 27 | QAQTNARAIAAMKNSIQATNRAVFEVKEGTQQLAIAVQAIQDHINT | 9 | 0 | 0 | 0 |
| NDV | 27 | QANQNAANILRLKESITATIEAVHEVTDGLSQLAVAVGKMQQFVND | 9 | 2 | 0 | 4 |
| Pneumo | ||||||
| BRSV | 20 | KVLHLEGEVNKIKNALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDK | 9 | 2 | 1 | 1 |
| HRSV | 20 | KVLHLEGEVNKIKNALLSTNKAVVSLSNGVSVLTSKVLDLKNYINN | 9 | 2 | 1 | 1 |
| PVM | 20 | KTVQLESEIALIRDAVRNTNEAVVSLTNGMSVLAKVVDDLKNFISK | 9 | 0 | 4 | 0 |
| TRTV | 24 | KTIRLEGEVKAIKNALRNTNEAVSTLGNGVRVLATAVNDLKEFISK | 9 | 4 | 5 | 2 |
Add dist is the distance between the cleavage site and beginning of the region shown. Abbreviations and GenBank accession numbers (Benson et al., 1998) for both Table 4, Table 5: paramyx, genus paramyxovirus; morbilli, genus morbillivirus; rubula, genus rubulavirus; pneumo, genus pneumovirus; BPIV, bovine parainfluenza (1353202); HPIV, human parainfluenza (138273, 138268, 138269, 1255649, and 1255651); Sendai (138276); CDV, canine distemper (138249); measles (138254); PPRV, peste-des-petits-ruminants (1085797); PDV, phocine distemper (138267); RPV, rinderpest (138275); SV5, simian parainfluenza 5 (335117); PRV, porcine rubulavirus (1808667); mumps (138259); NDV, Newcastle disease (465403); BRSV, bovine respiratory syncytial (138248); HRSV, human respiratory syncytial (138250); PVM, pneumonia virus of mice (549309); TRTV, turkey rhinotracheitis (138283).