Table 1.
Target virus and region | Primer or probe name | Sequence (5′–3′)a | 5′end position (accession no.) |
Reference |
---|---|---|---|---|
GRAV (VP6) | T207-F | GGAGGTTCTGTAYTCATTGTCAAAA | 26 (X94617) | Logan et al., 2006 |
T234-R | CCTATTCCTCCTGTTTGAAAATCAT | 178 (U10031) | This study | |
T223-ROX | AAT(+C)AAA(+T)GATAG(+T)CAC(+T)ATGA | 120 (U10031) | This study | |
GCRV (VP6) | T148-F | CCGTGAAGAGAATGGTGATGTAGA | 1187 (M94157) | Chun et al., 2010 |
T243-R | CATAGTTCACATTTCATCCTCCTG | 1348 (M94157) | This study | |
T150-Quasar670 | AACCAATCTCTATGTGGACTACATACCA | 1225 (M94157) | Chun et al., 2010 | |
PAstV1 (capsid) | T217-F | CCAAAACCAGCAATCCGTCAA | 260 (Y15938) | This study |
T218-R | GCCCCTAAAGCAACGATCGG | 420 (Y15938) | This study | |
T219-Quasar705 | TTCTTGTCAAGGATAATACGGGG | 363 (Y15938) | This study | |
PAstV4 (RdRp) | T220-F | ACAGCGCTGCATGGGAAACTC | 863 (GU562296) | This study |
T221-R | AGGCTTATGCTTTGGTCCGC | 1045 (GU562296) | This study | |
T222-FAM | AGGCAGATGGACAGGCTTTGGAG | 1001 (GU562296) | This study | |
PKoV (5′UTR) | T248-F | TCTCTGACCTCTGAAGTGCACT | 462 (JX401523.1) | This study |
T249-R | TGAAGAAGCCATGTGTCTTGTC | 589 (JX401523.1) | This study | |
T250-FAM | GGTTGCGTGGCTGGGAATCCAC | 486 (JX401523.1) | This study | |
PCV2 (Rep) | T176-F | GGCCACCTGGGTGTGGTAAA | 571 (JQ002672) | Gagnon et al., 2010 |
T177-R | CCCACCACTTGTTTCTAGGTGGTT | 660 (JQ002672) | Gagnon et al., 2010 | |
T178–FAM | TTTGCAGACCCGGAAACCACATACTGGA | 609 (JQ002672) | Gagnon et al., 2010 | |
MS2 | T210-F | TGGCACTACCCCTCTCCGTATTCAC | 289 (NC.001417) | Liu et al., 2011a |
T211-R | GTACGGGCGACCCCACGATGAC | 387 (NC.001417) | Liu et al., 2011a | |
T212-TET | CACATCGATAGATCAAGGTGCC | 330 (NC.001417) | Liu et al., 2011a |
Note: (+C) or (+T) indicates a locked nucleic acid (LNA).