Table 1.
List of the 32 overlapping genes evolving in accordance with the asymmetric model.
| Genome ac. number (homolog) | Virus species | Overlapping gene | Chi-square analysis of amino acid substitutions | Chi-square analysis of nucleotide substitutions | Most variable protein |
|---|---|---|---|---|---|
| NC_001366 (EU542581) | Theiler's murine encephalomyelitis virus | polyprotein/L* | 11.60 | 6.79 | L* |
| NC_004102 (JQ061474) | Hepatitis C virus | polyprotein/F (ARFP) | 36.27 | 25.11 | F |
| NC_002021 (CY109232) | Influenza A virus | RdRp (subunit PB1)/PB1-F2 | 32.36 | 20.61 | PB1-F2 |
| NC_002022 (KY614903) | Influenza A virus | RdRp (subunit PA)/PA-X | 6.83 | 8.06 | PA-X |
| NC_001498 (KM089831) | Measles virus | V/phosphoprotein (P) | 10.80 | 8.60 | phosphoprotein |
| NC_001552 (KF687311) | Sendai virus | phosphoprotein (P)/C′ | 18.52 | 9.01 | phosphoprotein |
| NC_024473 (JX121105) | Vesicular stomatitis New Jersey virus | phosphoprotein (P)/C′ | 4.50 | 4.35 | C′ |
| NC_008311 (JQ658375) | Murine norovirus | capsid protein (VP1)/VF1 | 20.57 | 17.50 | VF1 |
| NC_003627 (JX286709) | Maize chlorotic mottle virus | capsid protein/p31 | 6.07 | 4.85 | p31 |
| NC_002568 (MSBMVCCG) | Sesbania mosaic virus | Px/polyprotein P2ab (protease domain) | 7.33 | 4.03 | Px |
| NC_001749 (KC310737) | Encephalomyocarditis virus | 2B*/polyprotein | 8.85 | 11.72 | 2B* |
| NC_006008 (KP821839) | Bluetongue virus | capsid protein (VP6)/NS4 | 20.49 | 15.07 | capsid protein |
| NC_001409 (NC_006946) | Apple chlorotic leaf spot virus | movement protein/capsid protein | 9.50 | 3.91 | movement protein |
| NC_001749 (EU553489) | Apple stem grooving virus | movement protein (36 kd)/polyprotein (linker domain) | 113.83 | 69.34 | polyprotein (linker domain) |
| NC_005224 (NC_005227) | Puumala virus | nucleocapsid protein/non-structural protein NSs | 5.72 | 3.85 | non-structural protein NSs |
| NC_001427 (NC_015396) | Chicken anemia virus | capsid protein (VP2)/apoptin (VP3) | 6.26 | 4.96 | apoptin |
| NC_004674 (KC795968) | East African cassava mosaic virus | replication associated protein (Rep, AC1)/AC4 | 12.88 | 11.82 | AC4 |
| NC_001412 (NC_015051) | Beet curly top virus | movement protein (V3)/V2 | 4.56 | 4.57 | movement protein |
| NC_001401 (KP733795) | Adeno-associated virus-2 | capsid protein (VP1)/AAP (Assembly Activating Protein) | 10.87 | 5.80 | AAP |
| NC_001401 (AY530620) | Adeno-associated virus-2 | capsid protein (VP1)/X protein | 9.20 | 13.09 | X protein |
| NC_014126 (KU885997) | Providence virus | p130/replicase (p104) | 102.76 | 104.30 | p130 |
| NC_001554 (NC_007729) | Tomato bushy stunt virus | p19/p22 | 6.60 | 6.75 | p19 |
| NC_003608 (DQ392986) | Hibiscus chlorotic ringspot virus | p28/p23 | 15.09 | 11.90 | p23 |
| NC_003608 (DQ392986) | Hibiscus chlorotic ringspot virus | capsid protein/p25 | 15.00 | 14.62 | p25 |
| NC_004366 (NC_027710) | Tobacco bushy top virus | movement protein (ORF3)/movement protein (ORF4) | 40.04 | 33.30 | ORF3 |
| NC_004063 (JQ001816) | Turnip yellow mosaic virus | movement protein (p69)/replicase | 76.32 | 60.61 | movement protein |
| NC_001915 (NC_030242) | Infectious pancreatic necrosis virus | VP5/polyprotein | 23.62 | 19.81 | VP5 |
| NC_011505 (JX416217) | Rotavirus A | phosphoprotein (NSP5)/NSP6 | 4.09 | 4.38 | NSP6 |
| NC_001841 (KU877879) | Sweet potato feathery mottle virus | P1N-PISPO/polyprotein | 35.86 | 17.07 | P1N-PISPO |
| NC_001549 (JN662633) | Simian immunodeficiency virus | vif protein/vpx protein | 6.46 | 5.78 | vif protein |
| NC_001607 (AF136236) | Borna disease virus | X protein/phosphoprotein (P) | 6.51 | 6.69 | X protein |
| NC_006497 (GU830910) | Infectious salmon anemia virus | P6 (ORF2)/P7 (ORF1) | 31.16 | 27.78 | P6 |