Table 2.
Nucleotide and translated amino acid comparisons with the most similar isolats from Genbank.
| Avian genes | Duck/Malaysia/F118/08/04 H5N2, Duck/Malaysia/F189/08/04 H5N2 |
Duck/Malaysia/F59-04/98 H5N2 |
Duck/Singapore/F119/3/97 H5N3 |
|||
|---|---|---|---|---|---|---|
| Isolate | Max identity | Isolate | Max identity | Isolate | Max identity | |
| PB2 | Mallard/Gurjev/244/1982 H14 (Duck/Hokkaido/Vac-3/2007 H5N1) | 93% (98%) | Chicken/Iran/11T/1999 H9N2 (Duck/HK/147/1977 H9N6) | 95% (98%) | Turkey/Italy/4169/1999 H7N1 (Duck/Nanchang/1904/1992 H7N1) | 96% (99%) |
| PB1 | Duck/Nanchang/4-165/2000 H4N6 (Environment/Delaware/232/2005 H11N8) | 95% (98%) | Duck/Nanchang/1941/1993 H4N4 (Mallard/Postdam/178-4/83 H2N2) | 96% (98%) | Duck/Nanchang/1941/1993 H4N4 (Pintail/Ohio/73/1989 H6N2) | 96% (98%) |
| PA | Swan/Hokkaido/51/1996 H5N3 (Turkey/Italy/4169/1999 H7N1) | 96% (99%) | Wild duck/Shantou/19988/2000 H4N9 (Mallard/Netherlands/12/2000 H7N3) | 96% (99%) | Wild duck/Shantou/19988/2000 H4N9 (Duck/Denmark/65047/04 H5N2) | 97% (99%) |
| HA | Mallard/Italy/208/2000 H5N3 (Mallard/Italy/208/2000 H5N3) | 94% (96%) | Swan/Hokkaido/51/1996 H5N3 (Mallard/Netherlands/3/99 H5N2) | 96% (97%) | Swan/Hokkaido/51/96 H5N3 (Mallard/Netherlands/3/99 H5N2) | 98% (98%) |
| NP | Mallard/Xuyi/8/2004 H11N (Duck/Nanchang/1904/1992 H7N1) | 96% (99%) | Poultry/Italy/373/1997 H5N2, Poultry/Italy/330/1997 H5N2, Chicken/Italy/312/1997 H5N2 (Duck/Hong Kong/3461/99 H6N1) | 95% (97%) | Duck/Singapore/645/97 H5N3 (Duck/England/1/1956 H11N6) | 99% (99%) |
| NA | Duck/Mongolia/54/2001 H5N2 (Duck/Eastern China/848/2003 H3N2) | 97% (97%) | Duck/Nanchang/1749/1992 H11N2 (Duck/Denmark/65047/04 H5N2) | 94% (96%) | Mallard/Italy/208/2000 H5N3 (Mallard/Italy/208/00 H5N3) | 95% (96%) |
| M | Duck/Jiang Xi/6146/2003 H5N3 (M1: Chicken/Korea/S6/2003 H3N2) (M2: A/swan/Guangxi/307/2004 H5N1) | 97% (100%) (100%) | Duck/Hokkaido/95/2001 H2N2 (M1: Duck/Germany/113/95 H9N2) (M2: Chicken/Singapore/98 H5N2) | 97% (100%) (100%) | Duck/Hokkaido/120/2001 H6N2 (M1: Duck/Germany/113/95 H9N2) (M2: Chicken/Singapore/1997 H5N3) | 98% (100%) (100%) |
| NS | Duck/Taiwan/WB459/2004 H6N5 (NS1: Duck/NY/14933/95 H6N8) (NS2: duck/Hong Kong/278/1978 H2N9) | 96% (96%) (96%) | Duck/Hong Kong/610/79 H9N2 (NS1: Duck/NY/14933/95 H6N8) (NS2: Chicken/Korea/LPM88/2006 H3N2) | 96% (98%) (100%) | Duck/Hong Kong/610/79 H9N2 (NS1: Duck/NY/14933/95 H6N8) (NS2: Herring gull/DE/677/1988 H2N8) | 97% (98%) (100%) |
The percent maximum identities at the aa level are indicated within brackets.