Table 1.
The sequences of primers and probes designed for screening in the study.
Primer/probe sets |
Primers Name | Oligonucleotide sequences (5′-3′) | Product sizes (bp) |
---|---|---|---|
1 | F1-1 | 5′-agagcttggtgtgaatacagaccttttgttgac-3′ | 251 |
R1-1 | 5'-【Biotin】tcgaatttgatcaatttttgataatcctctatc-3′ | ||
1LF | 5'-【FAM】ttggaaacagcgccggcaggaggaagctc【dSpacer】ggaaataggctgaatgta【C3-spacer】-3′ | ||
2 | F1-2 | 5′-attgaatggacataacatgtctgggaatcatg-3′ | 130 |
R1-2 | 5'-【Biotin】caaatataatttagttggttccacgaagatcattc-3′ | ||
1LF | 5'-【FAM】ttggaaacagcgccggcaggaggaagctc【dSpacer】ggaaataggctgaatgta【C3-spacer】-3′ | ||
3 | F1-3 | 5′-agagcttggtgtgaatacagaccttttgttgac-3′ | 169 |
R1-3 | 5'-【Biotin】ttgataatcctctatcccctcatatagagatt-3′ | ||
1LF | 5'-【FAM】ttggaaacagcgccggcaggaggaagctc【dSpacer】ggaaataggctgaatgta【C3-spacer】-3′ | ||
4 | F1-4 | 5′-agagcttggtgtgaatacagaccttttgttgac-3′ | 217 |
R1-4 | 5'-【Biotin】gttctcttccacattatcatactccattacctcg-3′ | ||
1LF | 5'-【FAM】ttggaaacagcgccggcaggaggaagctc【dSpacer】ggaaataggctgaatgta【C3-spacer】-3′ | ||
5 | 2F-1 | 5′-cggaaataggctgaatgtaactctaaacggaatg-3′ | 178 |
2R-1 | 5'-【Biotin】tttctcatcctcctcatacctaatcaagttctc-3′ | ||
2LF | 5'-【FAM】ctctatatgaggggatagaggattatcaaa【dSpacer】attgatcaaattcgagg【C3-spacer】-3′ | ||
6 | 2F-2 | 5′-cggaaataggctgaatgtaactctaaacggaatg-3′ | 189 |
2R-2 | 5’-【Biotin】gtgcttgtaaaccaacctacaacagcagataaaac-3′ | ||
2LF | 5'-【FAM】ctctatatgaggggatagaggattatcaaa【dSpacer】attgatcaaattcgagg【C3-spacer】-3′ | ||
7 | 3F | 5′- aggatggagaatggtggagtatagaaaacc -3′ | 235 |
3R | 5'-【Biotin】ctcgtgggagccaagtaagacatatctaatgt -3′ | ||
3LF | 5'-【FAM】aggatgcacacagatagaacagagtttgaa【dSpacer】aattagatattaaggc【C3-spacer】-3′ | ||
8 | 4F | 5′-ctaaacggaatgatcttcgtggaaccaacta-3′ | 279 |
4R | 5'-【Biotin】cgtgcttgtaaaccaacctacaacagcagata-3′ | ||
4LF | 5'-【FAM】aatggagtatgataatgtggaagagaactt【dSpacer】attaggtatgaggagg【C3-spacer】-3′ |
Note: F: forward primer; R: reverse primer; LF: probe; FAM: Carboxyfluorescein; dSpacer: a tetrahydrofuran residue; C3-spacer: 3′-block.