Table 2.

List of oligonucleotides, primers and plasmid templates used to generate RNA probes

Plasmid template	Sense oligo	Antisense oligo	Corresponding RNA
ptruncA	O1	O2	RNA-A
ptruncB	O3	O4	RNA-B
ptruncC	O5	O6	RNA-C
ptruncG	O7	O8	RNA-G
pmutE	O9	O10	–
pmutF	O11	O12	–
pmutH	O13	O14	–
pmutI	O15	O16	–

Plasmid template	Sense primer	Antisense primer	Corresponding RNA
pmutE	P5	P6	RNA-E
pmutF	P7	P8	RNA-F
pmutH	P2	P1	RNA-H
pmutI	P2	P12	RNA-I
pSHFVORF93NCR	P3	P4	RNA-D
pM115128	P13	P14	EAV3′(+)NCR RNA
pTVRORF7	P15	P16	PRRSV3′(+)NCR RNA
pWNV3′(+)SL	P9	P10	WNV3′(+)SL RNA
pSHFV3NCR	P2	P11	3NCRpl RNA