Table 2.
Amino acid and nucleotide identity of the partial polymerase and the full length capsid genes of the Korean unclassified bovine enteric caliciviruses compared with Bo/Newbury1/1976/UK and Bo/NB/1980/US
| Isolate | Nucleotide (nt) and amino acid (aa) identity to |
|||||||
|---|---|---|---|---|---|---|---|---|
| Bo/Newbury1/1976/UK |
Bo/NB/1980/US |
|||||||
| Polymerase |
Capsid |
Polymerase |
Capsid |
|||||
| nt | aa | nt | aa | nt | aa | nt | aa | |
| Bo/MA16/04/KOR | 78.4 | 82.8 | NA | 87.1 | 93.8 | NA | ||
| Bo/MA56/04/KOR | 78.4 | 82.8 | NA | 87.1 | 93.8 | NA | ||
| Bo/SA68/04/KOR | 77.8 | 81.3 | NA | 85.6 | 92.2 | NA | ||
| Bo/MA91/04/KOR | 77.8 | 82.8 | NA | 86.6 | 93.8 | NA | ||
| Bo/MA95/04/KOR | 78.4 | 82.8 | NA | 87.1 | 93.8 | NA | ||
| Bo/MA99/04/KOR | 77.3 | 79.7 | NA | 85.1 | 90.6 | NA | ||
| Bo/MA120/04/KOR | 76.8 | 81.3 | NA | 86.6 | 92.2 | NA | ||
| Bo/MA129/04/KOR | 77.8 | 81.3 | NA | 85.6 | 92.2 | NA | ||
| Bo/MA137/04/KOR | 76.8 | 81.3 | NA | 86.6 | 92.2 | NA | ||
| Bo/MA164/04/KOR | 77.3 | 81.3 | NA | 86.1 | 92.2 | NA | ||
| Bo/HP167/04/KOR | 78.4 | 82.8 | NA | 87.6 | 93.8 | NA | ||
| Bo/MA176/04/KOR | 77.8 | 81.3 | NA | 86.1 | 92.2 | NA | ||
| Bo/SA181/04/KOR | 78.4 | 82.8 | NA | 87.1 | 93.8 | NA | ||
| Bo/MA216/04/KOR | 78.4 | 82.8 | NA | 86.1 | 93.8 | NA | ||
| Bo/MA236/04/KOR | 77.3 | 81.3 | NA | 86.1 | 92.2 | NA | ||
| Bo/MA360/04/KOR | 77.8 | 81.3 | NA | 85.6 | 92.2 | NA | ||
| Bo/MA39/04/KO | NA | 86.1 | 92.3 | NA | 87 | 92.9 | ||
| Bo/SA63/04/KOR | NA | 86.7 | 93.3 | NA | 87.6 | 93.8 | ||
| Bo/MA271/04/KOR | NA | 86.5 | 93.1 | NA | 87.5 | 93.6 | ||
| Bo/MA274/04/KOR | NA | 85.7 | 92.7 | NA | 86.9 | 93.1 | ||
| Bo/MA278/04/KOR | NA | 86.2 | 93.1 | NA | 87.4 | 93.6 | ||
| Bo/MA298/04/KOR | NA | 86.1 | 93.3 | NA | 87.3 | 93.8 | ||
| Bo/MA362/04/KOR | NA | 86.1 | 93.3 | NA | 87.2 | 93.6 | ||
| Bo/MA415/04/KOR | NA | 86.3 | 93.3 | NA | 87.3 | 93.8 | ||
| Bo/MA474/05/KOR | NA | 85.9 | 93.3 | NA | 87 | 93.8 | ||
| Bo/MA567-1/05/KOR | NA | 86.3 | 92.9 | NA | 87.4 | 93.4 | ||
| Bo/MA567-2/05/KOR | NA | 86.2 | 92.7 | NA | 87.3 | 93.3 | ||
| Bo/MA729/05/KOR | NA | 85.8 | 92.3 | NA | 86.8 | 92.9 | ||
| Bo/Newbury1/76/UK | NA | NA | 81.4 | 84.4 | 92.9 | 98.9 | ||
| Bo/Penrith142/00/UK | 94.3 | 96.6 | NA | 79.4 | 84.4 | NA | ||
| Bo/Penrith143/00/UK | 93.8 | 96.6 | NA | 78.9 | 84.4 | NA | ||
| Bo/Penrith150/00/UK | 92.8 | 95.3 | NA | 77.8 | 82.8 | NA | ||
| Bo/Penrith151/00/UK | 93.3 | 96.9 | NA | 78.4 | 84.4 | NA | ||
| Bo/Starcross93/00/UK | 80.9 | 84.4 | NA | 88.1 | 95.3 | NA | ||
| Bo/Starcross117/00/UK | 93.3 | 96.9 | NA | 78.4 | 84.4 | NA | ||
| Bo/NB/80/US | 81.4 | 84.4 | 92.9 | 98.9 | NA | NA | ||
| Bo/CV23-OH/02/US | 79.9 | 82.8 | NA | 85.6 | 92.2 | NA | ||
| Bo/CV504-OH/02/US | NA | 89.8 | 98 | NA | 92.3 | 98.5 | ||
| Bo/CV519-OH/02/US | NA | 86.9 | 93.8 | NA | 87.8 | 93.4 | ||
| Bo/CV526-OH/02/US | NA | 89.8 | 98 | NA | 92.2 | 98.5 | ||
| Bo/CV531-OH/02/US | NA | 89.9 | 98.4 | NA | 92 | 98.5 | ||
| Bo/CV548-OH/02/US | NA | 89.3 | 98.2 | NA | 91.4 | 98.7 | ||
| Bo/CV562-OH/02/US | NA | 89.6 | 98.4 | NA | 91.7 | 98.7 | ||
NA, genomic sequence for region not available.