Table 2.
Individual nonstructural protein (nsP) coding sequence identities, adding increasingly more divergent VEE virus (and alphavirus) strain sequences
| nsP1 |
N-term. nsP2 |
C-term. nsP2 |
N-term. nsP3 |
nsP4 |
|
|---|---|---|---|---|---|
| %nt(%aa) | %nt(%aa) | %nt(%aa) | %nt(%aa) | %nt(%aa) | |
| TRD, TC-83, 71–180, P676, 3880, EVE | 89 (98) | 84 (96) | 84 (96) | 85 (98) | 86 (98) |
| +MENA, 68U201 | 77 (93) | 70 (93) | 68 (88) | 70 (92) | 70 (93) |
| +MUC, TON, 71D-1252 | 67 (87) | 61 (86) | 56 (78) | 59 (82) | 60 (87) |
| +CAB, PIX, 78V-3531, AG80-663 | 60 (79) | 55 (79) | 48 (66) | 55 (75) | 55 (81) |
| +EEEa | 49 (60) | 52 (72) | 38 (48) | 44 (56) | 50 (72) |
| +SINa | 41 (48) | 44 (56) | 27 (30) | 35 (40) | 45 (63) |
a
NA EEE virus strain 82V-2136 sequence, SIN strain HRsp sequence.