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. 2014 Mar 18;171(1):66–73. doi: 10.1016/j.vetmic.2014.03.009

Table 2.

Nucleotide identity of the 11 segments of RVA/Cow-wt/JPN/Tottori-SG/2013/G15P[14] to Japanese and non-Japanese bovine rotavirus strains from GenBank.

Strain Genotype (Homology to RVA/Cow-wt/Tottori-SG/2013/G15P[14] (%))
VP7 VP4 VP6 VP1 VP2 VP3 NSP1 NSP2 NSP3 NSP4 NSP5
 RVA/Cow-wt/JPN/Tottori-SG/2013/G15P[14] G15 (100) P[14] (100) I2 (100) R2 (100) C2 (100) M2 (100) A3 (100) N2 (100) T6 (100) E2 (100) H3 (100)
Japanese bovine strains
 RVA/Cow-tc/JPN/Sun9/2000/G8P[14] G8 (72.0) P[14] (95.8) I2 (88.4) R2 (96.0) C2 (92.2) M2 (94.1)
 RVA/Cow-wt/JPN/AzuK-1/2006/G21P[29] G21 (71.6) P[29] (64.7) I2 (96.0) R2 (96.4) C2 (93.1) M2 (96.9) A13 (74.4) N2 (89.4) T9 (77.6) E2 (94.5) H3 (97.1)
 RVA/Cow-wt/JPN/Dai-10/2008/G24P[33] G24 (70.6) P[33] (67.6) I2 (96.6) R2 (94.9) C2 (92.2) M2 (92.7) A13 (73.0) N2 (96.7) T9 (78.1) E2 (96.2) H3 (97.0)
 RVA/Cow-tc/JPN/BRV105/1983/G6P[1] G6 (71.8) P[1] (67.7) I2 (87.7) R2 (97.1) C2 (93.2) M2 (92.6) A3 (92.9) N2 (86.4) T6 (96.0) E2 (96.8) H3 (97.5)
non-Japanese bovine strains
 RVA/Cow-tc/USA/NCDV/1967/G6P[1] G6 (73.6) P[1] (67.7) I2 (88.3) R2 (95.8) C2 (93.2) M2 (92.8) A3 (93.2) N2 (86.6) T6 (95.7) E2 (96.4) H3 (98.3)
 RVA/Cow-tc/FRA/RF/1975/G6P[1] G6 (73.7) P[1] (67.6) I2 (88.2) R2 (97.2) C2 (93.1) M2 (92.8) A3 (93.1) N2 (86.6) T6 (96.1) E2 (97.2) H3 (97.4)
 RVA/Cow-tc/UK/1973/G6P[5] G6 (74.2) P[5] (65.3) I2 (88.8) R2 (92.5) C2 (92.6) M2 (93.1) A3 (87.8) N2 (87.4) T7 (83.0) E2 (90.6) H3 (93.1)
 RVA/Cow-tc/USA/WC3/1981/G6P[5] G6 (73.4) P[5] (64.9) I2 (88.3) R2 (96.9) C2 (93.0) M2 (94.3) A3 (92.8) N2 (88.0) T6 (95.7) E2 (92.0) H3 (97.4)
 RVA/Cow-wt/ARG/B383/1998/G15P[11] G15 (89.9) P[11] (60.2) I2 (85.5) R5 (80.7) C2 (84.1) M2 (85.9) A13 (73.8) N2 (87.7) T6 (88.1) E12 (87.5) H3 (97.7)

An open space means the sequence data could not be available.