Table 1.
Viruses | Primer ID | Sequences (5′–3′) | Reference | Product size |
---|---|---|---|---|
PEDV | PEDV-N-Fa | ATGGCTTCTGTCAGCTTTCA | GenBank DQ355221.1 |
1326 bp |
PEDV-N-Ra | TTAATTTCCTGTATCGAAGATCTCG | |||
PEDV-DPO-Fb | GGTATTGGAGAAAATCCTGACAGGIIIIIdGCAACAGCA | 251 bp | ||
PEDV-DPO-Rb | GACGCATCAACACCTTTTTCGIIIIITTCCGCATC | |||
PEDV-C-Fc | GGTATTGGAGAAAATCCTGACAGGCATAAGCAACAGCA | 251 bp | ||
PEDV-C-Rc | GACGCATCAACACCTTTTTCGACAAATTCCGCATC | |||
TGEV | TGEV-N-Fa | ATGGCCAACCAGGGACAA | GenBank KU729220.1 |
1149 bp |
TGEV-N-Ra | TTAGTTCGTTACCTCATCAATTATC | |||
TGEV-DPO-Fb | CTGTTCTTGCCGCACTTAAAAIIIIIGGTGTTGAC | 180 bp | ||
TGEV-DPO-Rb | TAGCTCCATAAAATCTTGTCACATCIIIIITACCTGCAG | |||
TGEV-C-Fc | CTGTTCTTGCCGCACTTAAAAAGTTAGGTGTTGAC | 180 bp | ||
TGEV-C-Rc | TAGCTCCATAAAATCTTGTCACATCACCTTTACCTGCA | |||
PoRV | PoRV-VP7-Fa | ATGTATGGTATTGAATATACCACAG | GenBank JN388691.1 |
981 bp |
PoRV-VP7-Ra | CTAGACTCGGTAATAAAAGGCAG | |||
PoRV-DPO-Fb | TGTTTTTAACAAAAGGATIIIIIACAGGGTCA | 318 bp | ||
PoRV-DPO-Rb | CTGTAGTCGAACATCCTAIIIIIAGAGTCTGC | |||
PoRV-C-Fc | TGTTTTTAACAAAAGGATGGCCAACAGGGTCA | 318 bp | ||
PoRV-C-Rc | CTGTAGTCGAACATCCTATCCCGAGAGTCTGC | |||
PDCoV | PDCoV-N-Fa | ATGGCCGCACCAGTAGTCCCTA | GenBank MH715491.1 |
1029 bp |
PDCoV-N-Ra | CTACGCTGCTGATTCCTGCTTT | |||
PDCoV-DPO-Fb | AGGCTACTCATCCTCAGTTTCGTGGIIIIIGAGTTCCGC | 400 bp | ||
PDCoV-DPO-Rb | GGGCCACTTACACGCTCCTGAGGTCIIIIICTAGCGTTG | |||
PDCoV-C-Fc | AGGCTACTCATCCTCAGTTTCGTGGCAATGGAGTTCCGC | 400 bp | ||
PDCoV-C-Rc | GGGCCACTTACACGCTCCTGAGGTCTTCCTCTAGCGTTG |
Primers were used to amplify the full-length of the target gene for positive standard control.
DPO primers were used to establish detection method.
Conventional primers were used as control for comparison with DPO primers.
“I” means deoxyinosine.