Table 1.
Frameshift efficiency for different mutants of group O of HIV-1
| Frameshift efficiency (%) |
|||
|---|---|---|---|
| Construct | Description | In vitro | In cultured cells |
| Frameshift efficiency for regions of different length of group O | |||
| pHIV/O-87-LUC | Long frameshift region | 10.2 (100) | 4.7 (100) |
| pHIV/O-60-LUC | Short frameshift region | 3.3 (32) | 1.9 (40) |
| Frameshift efficiency for mutants of group O | |||
| pHIV/O-k/o-LUC | Altered slippery sequence | 1.0 (10) | 0.2 (4) |
| pHIV/O-1.2-LUC | Substitution (3′ strand of stem 1) | 3.4 (33) | 0.6 (13) |
| pHIV/O-1.12-LUC | Substitution (stem 1 re-formed) | 10.0 (98) | 4.5 (96) |
| pHIV/O-DSL-LUC | Deletion (minus stem 1 and its capping loop) | 2.3 (23) | 0.4 (9) |
| Frameshift efficiency for mutations impairing or re-forming the pseudoknot | |||
| pHIV/O-2.1-LUC | Substitution (loop capping stem 1) | 4.4 (43) | 1.6 (34) |
| pHIV/O-2.2-LUC | Substitution (downstream segment) | 3.9 (38) | 2.1 (45) |
| pHIV/O-2.12-LUC | Compensatory (pseudoknot re-formed) | 10.3 (101) | 3.8 (81) |
| pHIV/O-ANT70-LUC | Long frameshift region for subtype ANT70 of group O | 4.0 (39) | 2.2 (47) |
All pHIV/O-LUC constructs contain the HIV-1 gag/pol frameshift region of group O MVP5180 (except for construct pHIV/O-ANT70-LUC). Mutants of the group O frameshift region are further identified by a short description recalling their characteristics (see details in Figure 3, Figure 4). For each (−1) construct, an in-frame (0) control was made to monitor the frameshift efficiency. The numbers between brackets represent the frameshift efficiency of each construct relative to pHIV/O-87-LUC, which is arbitrarily set at 100%. Results are the means of five to six independent experiments. Standard error on the mean was inferior or equal to 10%.