Table 1.
Percent aa and nt sequence identities between NLVs based on partial sequence of the RNA polymerase gene
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | ||
| – | 100.0 | 100.0 | 96.5 | 98.2 | 96.5 | 98.2 | 96.5 | 84.2 | 96.5 | 93.0 | 94.7 | 96.5 | 94.7 | 68.4 | 64.3 | 63.2 | 57.9 | 52.6 | 1 | A-1SVD |
| 100.0 | – | 100.0 | 96.5 | 98.2 | 96.5 | 98.2 | 96.5 | 84.2 | 96.5 | 93.0 | 94.7 | 96.5 | 94.7 | 68.4 | 64.3 | 63.2 | 57.9 | 52.6 | 2 | B-1SVD |
| 98.3 | 98.3 | – | 96.5 | 98.2 | 96.5 | 98.2 | 96.5 | 84.2 | 96.5 | 93.0 | 94.7 | 96.5 | 94.7 | 68.4 | 64.3 | 63.2 | 57.9 | 52.6 | 3 | 2086MR |
| 87.2 | 87.2 | 86.6 | – | 94.7 | 100.0 | 98.2 | 100.0 | 87.2 | 100.0 | 96.5 | 98.2 | 100.0 | 98.2 | 66.7 | 62.5 | 61.4 | 56.1 | 52.6 | 4 | 3470DD |
| 97.7 | 97.7 | 99.4 | 86.0 | – | 94.7 | 96.5 | 94.7 | 82.5 | 94.7 | 91.2 | 93.0 | 94.7 | 93.0 | 68.4 | 62.5 | 61.4 | 56.1 | 50.9 | 5 | 3503DD |
| 83.7 | 83.7 | 82.0 | 94.2 | 81.4 | – | 98.2 | 100.0 | 84.2 | 100.0 | 96.5 | 98.2 | 100.0 | 98.2 | 66.7 | 62.5 | 61.4 | 56.1 | 52.6 | 6 | 11MSU-MW |
| 85.5 | 85.5 | 84.9 | 89.5 | 84.3 | 86.6 | – | 98.2 | 82.5 | 98.2 | 94.7 | 96.5 | 98.2 | 96.5 | 66.7 | 62.5 | 61.4 | 56.1 | 52.6 | 7 | 803466WI |
| 84.9 | 84.9 | 84.3 | 95.9 | 83.7 | 96.5 | 90.1 | – | 84.2 | 100.0 | 96.5 | 98.2 | 100.0 | 98.2 | 66.7 | 62.5 | 61.4 | 56.1 | 52.6 | 8 | 803484WI |
| 69.8 | 69.8 | 70.9 | 70.9 | 70.3 | 66.9 | 72.1 | 69.8 | – | 84.2 | 80.7 | 82.5 | 84.2 | 84.2 | 57.9 | 62.5 | 57.9 | 56.1 | 50.9 | 9 | Jena |
| 84.3 | 84.3 | 83.7 | 95.3 | 83.1 | 95.9 | 89.5 | 99.4 | 69.8 | – | 96.5 | 98.2 | 100.0 | 98.2 | 66.7 | 62.5 | 61.4 | 56.1 | 52.6 | 10 | Bo/Penrith55/00/UK |
| 81.4 | 81.4 | 80.2 | 84.3 | 79.7 | 84.9 | 84.3 | 85.5 | 71.5 | 84.9 | – | 98.2 | 96.5 | 94.7 | 66.7 | 62.5 | 63.2 | 56.1 | 52.6 | 11 | Bo/Dumfries/94/UK |
| 80.8 | 80.8 | 79.7 | 85.5 | 79.1 | 87.2 | 83.1 | 86.6 | 69.8 | 87.2 | 87.8 | – | 98.2 | 96.5 | 66.7 | 64.3 | 63.2 | 57.9 | 54.4 | 12 | Newbury agent-2 |
| 87.2 | 87.2 | 86.6 | 100.0 | 86.0 | 84.2 | 89.5 | 95.9 | 70.9 | 95.3 | 84.3 | 85.5 | – | 98.2 | 66.7 | 62.5 | 61.4 | 56.1 | 52.6 | 13 | CV500-OH |
| 86.6 | 86.6 | 86.0 | 99.4 | 85.5 | 93.6 | 88.4 | 95.3 | 70.9 | 94.8 | 83.7 | 84.9 | 99.4 | – | 64.9 | 62.5 | 61.4 | 54.4 | 50.9 | 14 | CV514-OH |
| 52.9 | 52.9 | 52.9 | 54.1 | 52.9 | 52.9 | 51.7 | 54.1 | 45.9 | 54.1 | 51.2 | 51.7 | 54.1 | 52.9 | – | 80.4 | 84.2 | 57.9 | 49.1 | 15 | Desert Shield |
| 50.0 | 50.0 | 48.8 | 46.5 | 48.3 | 48.8 | 50.0 | 47.7 | 49.4 | 47.7 | 50.6 | 52.3 | 46.5 | 46.5 | 69.2 | – | 92.9 | 62.5 | 53.6 | 16 | Norwalk |
| 47.7 | 47.7 | 47.7 | 50.0 | 46.5 | 48.3 | 48.8 | 48.3 | 43.6 | 48.3 | 45.3 | 46.5 | 50.0 | 50.0 | 71.5 | 71.5 | – | 57.9 | 52.6 | 17 | Southampton |
| 46.5 | 46.5 | 47.7 | 50.0 | 45.9 | 47.1 | 48.3 | 48.3 | 50.0 | 47.7 | 47.7 | 47.1 | 50.0 | 49.4 | 55.8 | 55.2 | 56.4 | – | 80.7 | 18 | Lordsdale |
| 50.0 | 50.0 | 49.4 | 49.4 | 48.8 | 47.7 | 48.3 | 48.3 | 47.1 | 47.7 | 51.2 | 50.0 | 49.4 | 48.8 | 51.2 | 51.2 | 50.0 | 69.8 | – | 19 | MX |
Percent identities based on deduced amino acid (aa) sequences, in upper triangle; Percent identities based on nucleotide (nt) sequences, in lower triangle.