Table 2.
Percent amino acid sequence identities between NLVs based on partial sequence of the capsid gene
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | ||
99.2 | 56.7 | 56.7 | 95.6 | 56.7 | 96.4 | 56.7 | 56.7 | 98.8 | 99.2 | 94.8 | 97.6 | 97.2 | 96.8 | 95.2 | 95.6 | 95.2 | 56.7 | 40.7 | 37.9 | 37.5 | 33.5 | 35.1 | 1 | 17–19MSU-MW | |
56.3 | 56.3 | 95.6 | 56.3 | 95.6 | 56.3 | 56.3 | 98.8 | 99.2 | 94.0 | 97.6 | 96.4 | 96.0 | 94.4 | 95.2 | 94.8 | 56.3 | 40.7 | 37.9 | 37.5 | 33.1 | 35.1 | 2 | 1GM | ||
100.0 | 56.3 | 100.0 | 57.1 | 100.0 | 100.0 | 55.9 | 56.3 | 56.7 | 56.7 | 56.3 | 56.3 | 57.1 | 56.7 | 56.7 | 91.9 | 40.5 | 39.3 | 37.2 | 37.2 | 35.6 | 3 | 2086MR | |||
56.3 | 100.0 | 57.1 | 100.0 | 100.0 | 55.9 | 56.3 | 56.7 | 56.7 | 56.3 | 56.3 | 57.1 | 56.7 | 56.7 | 91.9 | 40.5 | 39.3 | 37.2 | 37.2 | 35.6 | 4 | 2167MR | ||||
56.3 | 94.0 | 56.3 | 56.3 | 95.2 | 95.6 | 92.7 | 94.8 | 94.8 | 93.1 | 92.7 | 94.4 | 93.5 | 56.3 | 40.3 | 37.1 | 37.1 | 32.7 | 35.1 | 5 | 2387108MI | |||||
57.1 | 100.0 | 100.0 | 55.9 | 56.3 | 56.7 | 56.7 | 56.3 | 56.3 | 57.1 | 56.7 | 56.7 | 91.9 | 40.5 | 39.3 | 37.2 | 37.2 | 35.6 | 6 | 3505DD | ||||||
57.1 | 57.1 | 95.2 | 96.0 | 92.7 | 94.8 | 98.4 | 94.4 | 95.6 | 93.5 | 93.1 | 57.5 | 41.5 | 37.5 | 37.9 | 33.1 | 35.5 | 7 | 803484WI | |||||||
100.0 | 55.9 | 56.3 | 56.7 | 56.7 | 56.3 | 56.3 | 57.1 | 56.7 | 56.7 | 91.9 | 40.5 | 39.3 | 37.2 | 37.2 | 35.6 | 8 | A-1SVD | ||||||||
55.9 | 56.3 | 56.7 | 56.7 | 56.3 | 56.3 | 57.1 | 56.7 | 56.7 | 91.9 | 40.5 | 39.3 | 37.2 | 37.2 | 35.6 | 9 | B-1SVD | |||||||||
98.8 | 93.5 | 97.2 | 96.0 | 95.6 | 94.0 | 94.8 | 94.4 | 55.9 | 40.3 | 37.9 | 37.1 | 32.7 | 34.7 | 10 | 11MSU-MW | ||||||||||
94.0 | 97.6 | 96.8 | 96.0 | 94.4 | 95.2 | 94.8 | 56.3 | 40.7 | 37.9 | 37.5 | 33.1 | 35.1 | 11 | 21MSU-MW | |||||||||||
95.6 | 94.4 | 92.7 | 94.0 | 94.8 | 94.0 | 56.7 | 40.3 | 37.5 | 56.7 | 33.1 | 33.9 | 12 | 32MSU-MW | ||||||||||||
95.6 | 95.6 | 96.8 | 97.6 | 97.2 | 56.7 | 40.7 | 37.5 | 37.9 | 33.1 | 35.1 | 13 | Bo/Dumfries/94/UK | |||||||||||||
94.8 | 95.6 | 94.4 | 94.0 | 56.3 | 41.1 | 38.3 | 38.3 | 33.1 | 35.5 | 14 | Bo/Penrith55/00/UK | ||||||||||||||
94.8 | 94.4 | 94.8 | 55.9 | 41.1 | 37.9 | 38.3 | 32.7 | 35.1 | 15 | Bo/Aberywtwth24/00/UK | |||||||||||||||
96.8 | 96.4 | 57.5 | 41.9 | 37.9 | 38.7 | 33.1 | 35.9 | 16 | Newbury agent-2 | ||||||||||||||||
98.0 | 56.7 | 41.1 | 37.5 | 37.9 | 32.7 | 36.7 | 17 | Bo/NLV/CH126/1998/NL | |||||||||||||||||
56.7 | 41.1 | 37.5 | 37.5 | 32.7 | 36.7 | 18 | Bo/NLV/CH131/1998/NL | ||||||||||||||||||
40.9 | 38.5 | 37.2 | 36.4 | 35.6 | 19 | Jena | |||||||||||||||||||
57.4 | 56.9 | 33.6 | 33.2 | 20 | Desert Shield | ||||||||||||||||||||
55.8 | 36.3 | 40.6 | 21 | Norwalk | |||||||||||||||||||||
32.8 | 32.1 | 22 | Southampton | ||||||||||||||||||||||
58.2 | 23 | Lordsdale | |||||||||||||||||||||||
24 | MX |