Table 2.
Nucleotide and amino acid substitutions in BEV/Egypt/2014/KM667941 genome in comparison with the closest strains (HQ663846, AY508697 and DQ092795).
| Genes | Region | Nucleotide substitution | Amino acid substitution | Amino acids site in translated ORF |
|---|---|---|---|---|
| 5 NTR | 21 | |||
| VP4 | P1 | 11 | 2 | S (24), A (66) |
| VP2 | 26 | 6 | K (147), A (205), S (208), D (220), S (222), T (278) | |
| VP3 | 22 | 2 | R (356), L (428) | |
| VP1 | 42 | 6 | S (599), I (614), N (681), N (818), A (819), N (820) | |
| 2A | P2 | 9 | 1 | R (898) |
| 2B | 12 | 1 | N (990) | |
| 2C | 32 | 1 | D (1334) | |
| 3A | P3 | 10 | 1 | A (1426) |
| 3B | – | – | – | |
| 3C | 16 | 2 | V (1575), A (1576) | |
| 3D | 12 | 2 | S (2066), T (2100) |
NTR, non-translated region; P, polyprotein; S, serine; A, alanine; K, lysine; D, aspartic acid; T, threonine; R, arginine; L, leucine; I, isoleucine; N, asparagine; V, valine.