TABLE 1.
Summary of microbe sequence analysis in swab samples
| Sample number | 1 | 2 | 3 | 4 | 5 |
|---|---|---|---|---|---|
| Total reads | 298 249 | 331 249 | 580 424 | 176 489 | 158 327 |
| Fungi | 42 779 (14.34%) | 21 572 (6.51%) | 58 245 (10.04%) | 7655 (4.34%) | 3396 (2.14%) |
| Bacteria | 239 804 (80.41%) | 296 948 (89.65%) | 485 943 (83.72%) | 112 037 (63.48%) | 131 617 (83.13%) |
| Protozoa | 14 733 (4.94%) | 11 820 (3.57%) | 35 489 (6.11%) | 55 970 (31.71%) | 22 476 (14.20%) |
| Virus | 933 (0.31%) | 909 (0.27%) | 747 (0.13%) | 827 (0.47%) | 838 (0.53%) |
| Influenza A viruses | 44 | 32 | 102 | 254 | 0 |
| Novel A (H1N1) | 44 | 32 | 102 | 0 | 0 |
| Seasonal A (H3N2) | 0 | 0 | 0 | 254 | 0 |
| Adenovirus | 130 | 162 | 57 | 55 | 80 |
| Herpesvirus | 34 | 32 | 53 | 23 | 18 |
| Murine leukaemia virus | 32 | 28 | 23 | 37 | 36 |
| Mapping to influenza A virus Genome cover rate (%) |
10.39 | 8.39 | 17.79 | 44.56 | 0 |