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. 2002 May 25;193(1):520–523. doi: 10.1006/viro.1993.1158

Sequence Analysis of the Nucleocapsid Protein Gene of Rat Coronavirus SDAV-681

Satoshi Kunita 1, Miki Mori 1, Eiji Terada 1
PMCID: PMC7131158  PMID: 8438589

Abstract

The nucleotide sequence of the 3′-end of the genomic RNA of sialodacryoadenitis virus strain 681 (SDAV-681) was determined. A large open reading frame encoding a 454-amino-acid protein was identified as the nucleocapsid protein (N) gene, since the predicted protein is similar in size, chemical properties, and amino acid sequence to the N proteins of other coronaviruses. The amino acid variance of the N proteins between SDAV and mouse hepatitis virus (MHV) is not markedly different from that among MHV strains. A high degree of genetic relatedness between SDAV and MHV was revealed in the intergenic and 3′-noncoding sequences as well as in the N gene.


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