Table 3.
Comparative metric and performance of three NG sequencers.
Platforms |
|||
---|---|---|---|
Roche (454) | Illumina | SOLiD | |
Sequencing chemistry | Pyrosequencing | Polymerase based sequencing-by-synthesis | Ligation based sequencing |
Amplification approach | Emulsion PCR | Bridge amplification | Emulsion PCR |
Paired ends/Separation | Yes/3 kb | Yes/200 bp | Yes/3 kb |
Mb/run | 100 mb | 1300 mb | 3000 mb |
Time/run (paired ends) | 7 h | 4 days | 5 days |
Read length | 250 bp | 32–40 bp | 35 bp. |
Source: Mardis (2008).