TABLE 3.
Plasmid and prophage sequences annotated by PlacnetW and Phaster software, respectively.
| Isolate | Plasmids and prophage sequences | Similaritya | Contigsb | Size(bp) | CDS |
| 13F-69 | Serratia sp. SSNIHc | 50/99.7 | 1 | 119,213 | 115 |
| B. bronchiseptica R906 plasmid | 99/99.6 | 1 | 57,271 | 64 | |
| Siphoviridae phage | 100 | – | 17,500 | 18 | |
| 15F-69 | S. marcescens AR_0027c | 30/98 | 1 | 53,451 | 52 |
| Dickeya sp. Secpp 1600c | 41/98 | 1 | 26,298 | 12 | |
| K. pneumoniae AR_0139c | 80/96.5 | 1 | 83,980 | 92 | |
| O7-16 | Siphoviridae phage | 110 | – | 43,600 | 61 |
| Myoviridae phage | 150 | – | 34,400 | 40 | |
| Myoviridae phage | 110 | – | 20,400 | 25 | |
| O1-16 | pADAP plasmid | 55/76.9 | 1 | 83,980 | 92 |
| O10-16 | pADAP plasmid | 64.3/75.2 | 2 | 66,877 | 85 |
| O11-16 | Myoviridae phage | 150 | – | 34,400 | 40 |
The unique complete plasmid was highlighted in bold. CDS, protein-coding sequence. aIdentity score of phages (minimum threshold = 60) and plasmids (expressed as query cover/% identity from BLAST report). bNumber of contigs separately plotted in PlacnetW that matched with the same BLAST identification. cContigs plotted as putative plasmids by PlacnetW software which sequences matched with fragments of bacterial chromosomes.