Table 2.
Focal Deletions identified by GISTIC 2.0 analysis. Regions are ordered by chromosome
| cytoband | q value | wide peak boundaries | Size (kb) | Frequency (n = 51) (%) | Gene |
|---|---|---|---|---|---|
| 1p36.32 | 4.4821e-06 | chr1:2546230–3,101,761 | 555,531 | 26 (51) | ACTRT2 |
| 2p21 | 0.043569 | chr2:42871145–43,761,298 | 890,153 | 10 (19.6) | ZFP36L2, THADA, LOC728819 |
| 4q35.1 | 0.0032739 | chr4:184659448–185,070,554 | 411,106 | 24 (47) | ING2, C4orf41, RWDD4A |
| 5q33.2 | 0.00026001 | chr5:153410221–153,828,954 | 418,733 | 27 (53) | GALNT10, SAP30L |
| 8q24.3 | 0.11261 | chr8:140741552–141,656,154 | 914,602 | 6 (11.8) | CHRAC1, NIBP |
| 10p15.3 | 0.000616 | chr10:1166401–3,107,538 | 1941,137 | 34 (66.7) | ADARB2, C10orf109 |
| 11q25 | 7.4472e-10 | chr11:133707909–134,452,384 | 744,475 | 34 (67) | B3GAT1 |
| 12p13.33 | 0.023341 | chr12:417634–738,596 | 320,962 | 8 (15.7) | NINJ2, B4GALNT3 |
| 13q34 | 2.2677e-05 | chr13:113562426–113,786,946 | 224,52 | 20 (39) | FAM70B |
| 14q23.3 | 0.034764 | chr14:64959313–66,072,039 | 1112,726 | 12 (23.5) | hsa-mir-625, FUT8 |
| 15q13.1 | 0.001437 | chr15:25429109–26,306,775 | 877,666 | 30 (58.8) | OCA2, HERC2 |
| 22q13.33 | 4.0476e-05 | chr22:49396414–49,482,863 | 86,449 | 28 (55) | ARSA |