Table 2.

20 most differentially expressed proteins in Jurkat and SUDHL5 after SAHA treatment

Gene symbol	Protein name	Fold change*
Jurkat up
RWDD2B	RWD domain-containing protein 2B	11.3
APOB	Apolipoprotein B-100	9.8
APOC3	Apolipoprotein C-III	6.9
RETSAT	All-trans-retinol 13,14-reductase	3.3
FERMT2	Fermitin family homolog 2	2.8
TUBB2A	Tubulin beta-2A chain	2.6
MT-CO1	Cytochrome c oxidase subunit 1	2.5
TUBB3	Tubulin beta-3 chain	2.3
BAG3	BAG family molecular chaperone regulator 3	2.2
H1FX	Histone H1x	2.1
Jurkat down
UNG	Uracil-DNA glycosylase	− 3.3
TTC4	Tetratricopeptide repeat protein 4	− 2.6
TIMM8B	Mitochondrial import inner membrane translocase subunit Tim8 B	− 2.5
NAF1	H/ACA ribonucleoprotein complex non-core subunit NAF1	− 2.1
ZFAND5	AN1-type zinc finger protein 5	− 2.0
CD3E	T-cell surface glycoprotein CD3 epsilon chain	− 1.9
CD247	T-cell surface glycoprotein CD3 zeta chain	− 1.9
TIMM13	Mitochondrial import inner membrane translocase subunit Tim13	− 1.9
CCDC86	Coiled-coil domain-containing protein 86	− 1.9
CD3D	T-cell surface glycoprotein CD3 delta chain	− 1.9
SUDHL5 up
PIK3CB	Phosphatidylinositol 4,5-bisphosphate 3-kinase cat. subunit beta	8.2
PDCD4	Programmed cell death protein 4	4.5
MGST3	Microsomal glutathione S-transferase 3	3.4
VCL	Vinculin	3.1
HSDL2	Hydroxysteroid dehydrogenase-like protein 2	2.5
PNKD	Probable hydrolase PNKD	2.3
ZNF593	Zinc finger protein 593	2.1
ACO1	Cytoplasmic aconitate hydratase	2.0
H1FX	Histone H1x	2.0
ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	2.0
SUDHL5 down
TYMS	Thymidylate synthase	− 2.9
UBE2C	Ubiquitin-conjugating enzyme E2 C	− 2.7
RRM1	Ribonucleoside-diphosphate reductase large subunit	− 2.6
RRM2	Ribonucleoside-diphosphate reductase subunit M2	− 2.2
SYF2	Pre-mRNA-splicing factor SYF2	− 2.1
CKS2	Cyclin-dependent kinases regulatory subunit 2	− 2.1
LARP4	La-related protein 4	− 2.1
LIMD2	LIM domain-containing protein 2	− 2.0
MPV17L2	Mpv17-like protein 2	− 2.0
RSL24D1	Probable ribosome biogenesis protein RLP24	− 2.0

*Linear fold change