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. Author manuscript; available in PMC: 2021 Apr 1.
Published in final edited form as: J Comput Aided Mol Des. 2020 Feb 27;34(4):335–370. doi: 10.1007/s10822-020-00295-0

Table 4. Eight consistently well-performing prediction methods based on consistent ranking within the Top 20 according to various statistical metrics.

Submissions were ranked according to RMSE, MAE, R2, and τ. Many top methods were found to be statistically indistinguishable considering uncertainties of error metrics. Moreover, sorting of methods was influenced significantly by the choice of metric chosen. We assessed top 20 methods according the each metric to determine which methods are always among the top 20 according to all four statistical metrics chosen. A set of consistently well-performing methods were determined: Four QM-based and four empirical methods. Seven of these methods are blind submissions of SAMPL6 Challenge, and one of them (REF13) is a non-blind reference calculation. Performance statistics are provided as mean and 95% confidence intervals.

ID Method Name Category Type RMSE MAE R2 Kendall’s Tau (t)
hmz0n cosmotherm_FINE19 Physical (QM) Blind 0.38 [0.23, 0.55] 0.31 [0.19, 0.46] 0.77 [0.36, 0.94] 0.64 [0.17, 1.00]
gmoq5 Global XGBoost-Based QSPR LogP Predictor Empirical Blind 0.39 [0.28, 0.49] 0.34 [0.23, 0.46] 0.74 [0.40, 0.92] 0.59 [0.12, 0.89]
j8nwc EC_RISM_wet_P1w+2o Physical (QM) Blind 0.47 [0.17,0.75] 0.31 [0.15, 0.54] 0.74 [0.33, 0.97] 0.81 [0.46, 1.00]
hdpuj RayLogP-II, a cheminformatic QSPR model predicting the octanol/water partition coeZcient Empirical Blind 0.49 [0.37, 0.61] 0.44 [0.32, 0.57] 0.74 [0.40, 0.94] 0.67 [0.22, 1.00]
dqxk4 LogP_SMD_Solvation_DFT Physical (QM) Blind 0.49 [0.33, 0.62] 0.42 [0.26, 0.57] 0.69 [0.35, 0.91] 0.67 [0.27, 0.96]
vzgyt rfs-logp Empirical Blind 0.50 [0.27,0.68] 0.38 [0.21, 0.58] 0.72 [0.29, 0.95] 0.64 [0.23, 0.92]
qyzjx EC_RISM_dry_P1w+2o Physical (QM) Blind 0.54 [0.34, 0.75] 0.46 [0.31, 0.64] 0.73 [0.31, 0.97] 0.78 [0.44, 1.00]
REF13 SlogP (MOE) Empirical Reference 0.55 [0.38, 0.71] 0.47 [0.31,0.65] 0.69 [0.29, 0.92] 0.60 [0.08, 0.96]