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. Author manuscript; available in PMC: 2021 Apr 1.
Published in final edited form as: J Comput Aided Mol Des. 2020 Feb 27;34(4):335–370. doi: 10.1007/s10822-020-00295-0

Table 6. Statistics of the physical and empirical reference method predictions on the extra test of molecules.

Methods were ranked according to increasing RMSE in this table. Performance statistics of MAE, R2, and Kendall’s Tau are also provided. Mean and 95% con1dence intervals of all statistics are presented.

ID Method Name Category Type RMSE MAE R2 Kendall’s Tau (t)
EXT09 clogP (Biobyte) Empirical Reference 0.23 [0.16,0.29] 0.17 [0.12,0.23] 0.94 [0.86,0.98] 0.85 [0.75,0.93]
EXT12 MoKaJogP Empirical Reference 0.28 [0.20,0.35] 0.22 [0.16,0.28] 0.91 [0.82,0.97] 0.83 [0.73,0.91]
EXT11 logP(o/w) (MOE) Empirical Reference 0.32 [0.22,0.41] 0.24 [0.17,0.33] 0.90 [0.81,0.95] 0.80 [0.66,0.91]
EXT10 h_JogP (MOE) Empirical Reference 0.43 [0.34,0.51] 0.35 [0.26,0.45] 0.83 [0.62,0.93] 0.74 [0.55,0.90]
EXT13 SlogP (MOE) Empirical Reference 0.59 [0.48,0.69] 0.49 [0.36,0.61] 0.71 [0.41,0.87] 0.55 [0.33,0.73]
EXT08 YANK-SMIRNOFF-TIP3P-dry-oct Physical (MM) Reference 1.26 [0.88,1.60] 0.97 [0.69,1.28] 0.56 [0.16,0.83] 0.50 [0.23,0.73]
EXT07 YANK-GAFF-TIP3P-dry-oct Physical (MM) Reference 1.27 [0.69,1.74] 0.88 [0.57,1.26] 0.55 [0.19,0.88] 0.60 [0.34,0.81]
EXT02 YANK-GAFF-TIP3P-wet-oct Physical (MM) Reference 1.38 [0.94,1.78] 1.03 [0.70,1.40] 0.58 [0.26,0.83] 0.58 [0.35,0.78]
EXT05 YANK-SMIRNOFF-TIP3P-wet-oct Physical (MM) Reference 1.50 [0.96,1.98] 1.11 [0.75,1.52] 0.50 [0.13,0.81] 0.54 [0.29,0.75]