Table 6. Statistics of the physical and empirical reference method predictions on the extra test of molecules.
Methods were ranked according to increasing RMSE in this table. Performance statistics of MAE, R2, and Kendall’s Tau are also provided. Mean and 95% con1dence intervals of all statistics are presented.
ID | Method Name | Category | Type | RMSE | MAE | R2 | Kendall’s Tau (t) |
---|---|---|---|---|---|---|---|
EXT09 | clogP (Biobyte) | Empirical | Reference | 0.23 [0.16,0.29] | 0.17 [0.12,0.23] | 0.94 [0.86,0.98] | 0.85 [0.75,0.93] |
EXT12 | MoKaJogP | Empirical | Reference | 0.28 [0.20,0.35] | 0.22 [0.16,0.28] | 0.91 [0.82,0.97] | 0.83 [0.73,0.91] |
EXT11 | logP(o/w) (MOE) | Empirical | Reference | 0.32 [0.22,0.41] | 0.24 [0.17,0.33] | 0.90 [0.81,0.95] | 0.80 [0.66,0.91] |
EXT10 | h_JogP (MOE) | Empirical | Reference | 0.43 [0.34,0.51] | 0.35 [0.26,0.45] | 0.83 [0.62,0.93] | 0.74 [0.55,0.90] |
EXT13 | SlogP (MOE) | Empirical | Reference | 0.59 [0.48,0.69] | 0.49 [0.36,0.61] | 0.71 [0.41,0.87] | 0.55 [0.33,0.73] |
EXT08 | YANK-SMIRNOFF-TIP3P-dry-oct | Physical (MM) | Reference | 1.26 [0.88,1.60] | 0.97 [0.69,1.28] | 0.56 [0.16,0.83] | 0.50 [0.23,0.73] |
EXT07 | YANK-GAFF-TIP3P-dry-oct | Physical (MM) | Reference | 1.27 [0.69,1.74] | 0.88 [0.57,1.26] | 0.55 [0.19,0.88] | 0.60 [0.34,0.81] |
EXT02 | YANK-GAFF-TIP3P-wet-oct | Physical (MM) | Reference | 1.38 [0.94,1.78] | 1.03 [0.70,1.40] | 0.58 [0.26,0.83] | 0.58 [0.35,0.78] |
EXT05 | YANK-SMIRNOFF-TIP3P-wet-oct | Physical (MM) | Reference | 1.50 [0.96,1.98] | 1.11 [0.75,1.52] | 0.50 [0.13,0.81] | 0.54 [0.29,0.75] |