Table 3.

De novo assembly, BUSCO evaluation and accession numbers in GenBank of the 12 Oryza sativa genomes.

Variety Name	BioProject	BioSample	Genome size (bp)	#Contigs	Contig N50 (bp)	#Gaps	Scaffold N50 (bp)	BUSCO	Adjust BUSCO	Genome Accession	SRP	Supplementary Files (Bionano optical map)
CHAO MEO::IRGC 80273-1	PRJNA565484	SAMN12748601	376,856,903	55	11,024,768	43	30,350,168	97.60%	98.49%	VYIH00000000	SRP226088	SUPPF_0000003210
Azucena	PRJNA424001	SAMN08217222	379,627,553	28	22,940,949	16	30,954,872	97.80%	98.69%	PKQC000000000	SRP227255	SUPPF_0000003212
KETAN NANGKA::IRGC 19961-2	PRJNA564615	SAMN12718029	380,759,091	21	22,679,302	9	30,696,581	98.00%	98.89%	VYIC00000000	SRP226080	SUPPF_0000003204
ARC 10497::IRGC 12485-1	PRJNA565479	SAMN12748569	378,463,869	40	17,921,520	28	30,566,713	98.40%	99.30%	VYID00000000	SRP226093	SUPPF_0000003206
IR 64	PRJNA509165	SAMN10564385	386,698,898	104	7,352,909	92	31,218,896	95.70%	96.57%	RWKJ00000000	SRP227298	SUPPF_0000003213
PR 106::IRGC 53418-1	PRJNA563359	SAMN12672924	391,176,105	16	27,051,416	4	32,028,703	96.60%	97.48%	VYIB00000000	SRP226078	SUPPF_0000003202
LIMA::IRGC 81487-1	PRJNA564572	SAMN12715984	392,625,308	17	27,369,091	5	32,421,942	98.50%	99.40%	VXJH00000000	SRP226079	SUPPF_0000003203
KHAO YAI GUANG::IRGC 65972-1	PRJNA565481	SAMN12748590	393,737,720	19	21,823,919	7	32,080,718	98.60%	99.50%	VYIF00000000	SRP226086	SUPPF_0000003208
GOBOL SAIL (BALAM)::IRGC 26624-2	PRJNA564763	SAMN12721963	391,772,995	15	29,604,901	3	31,753,752	97.90%	98.79%	VXJI00000000	SRP226082	SUPPF_0000003205
LIU XU::IRGC 109232-1	PRJNA577228	SAMN13021815	392,033,263	17	30,913,760	5	32,301,089	98.40%	99.30%	WGGU00000000	SRP226085	SUPPF_0000003211
LARHA MUGAD::IRGC 52339-1	PRJNA565480	SAMN12748589	390,195,943	16	30,747,645	4	32,107,744	98.60%	99.50%	VYIE00000000	SRP226084	SUPPF_0000003207
NATEL BORO::IRGC 34749-1	PRJNA565483	SAMN12748600	383,720,936	16	27,825,079	4	31,305,988	98.10%	98.99%	VYIG00000000	SRP226087	SUPPF_0000003209