LncRNAs	Long non-coding RNAs
HCV	Hepatitis C virus
HCC	Hepatocellular carcinoma
LDLR	Low-density lipoprotein receptor
CLDN1	Claudin-1
IRES	Internal ribosome entry site
IFN	Interferon
PAMPs	Pathogen-associated molecular patterns
LPS	Lipopolysaccharide
RIG-I	Retinoic acid-inducible gene I
UTR	Untranslated region
PKR	Protein kinase R
DDX3X	DEAD (Asp-Glu-Ala-Asp) box helicase 3 X-linked
TLR3	Toll-like receptor 3
dsRNA	Double-stranded RNA
MDA5	Melanoma differentiation-associated protein 5
MAVS	Mitochondrial antiviral signaling protein
TRIF	Toll-interleukin-1 receptor domain-containing adapter protein inducing interferon beta
NF-κB	Nuclear factor κb
IRF	Interferon regulatory factors
IFNAR	IFN-α/β receptor
JAK	Janus kinase
STAT	Signal transducer and activator of transcription
ISGF3	IFN-stimulated gene factor 3
ISG	IFN-stimulated genes
Mx	Myxoma resistance protein
TRIM	Tripartite motif containing
IFITM	Interferon induced transmembrane protein
CH25H	Cholesterol 25-hydroxylase
OAS	Oligoadenylate synthetase
IFIT	Interferon induced protein
GBP1	Guanylate binding protein 1
BST2	Bone marrow stromal cell antigen 2
SOCS3	Suppressor of cytokine signaling 3
PP2A	Protein phosphatase 2
eIF2α	Eukaryotic translation initiation factor 2 alpha
ncRNAs	Non-coding RNAs
rRNAs	Ribosomal RNAs
tRNAs	Transfer RNAs
snRNAs	Small nuclear RNAs
snoRNAs	Small nucleolar RNAs
miRNAs	MicroRNAs
siRNAs	Small interfering RNAs
piRNAs	P-element-induced wimpy testis (PIWI)-interacting RNAs
mRNAs	Messenger RNAs
ORF	Open reading frame
LincRNAs	Long intergenic long non-coding RNAs
eRNAs	Enhancer RNAs
PROMPTs	Promoter upstream transcripts
NAT	Natural antisense transcript
vlincRNA	Very long lincRNA
HOTAIR	Homeobox C transcript antisense RNA
PVT1	LncRNA plasmacytoma variant translocation 1
MEG3	Maternally expressed 3
PANDAR	Promoter of CDKN1A (cyclin dependent kinase inhibitor 1A) antisense DNA damage-activated RNA
XRN1	5′-3′ exoribonuclease 1
GAS5	Growth arrest-specific transcript 5
PRC2	Polycomb repressive complex 2
SIRT1	Sirtuin 1
HULC	Highly upregulated in liver cancer
RXRA	Retinoid X receptor alpha
IGF2-AS	Insulin-like growth factor 2 antisense RNA
7SK	RNA component of 7SK nuclear ribonucleoprotein
PI4P	Phosphatidylinositol 4-phosphate
TSPOAP1-AS1	Translocator protein associated protein 1 (TSPOAP1) antisense RNA 1
MIR155HG	miRNA-155 host gene
pI:C	Polyinosinic–polycytidylic acid
PME-1	Phosphatase methylesterase 1
CSTB	Cystatin B
lncLRRC55-AS	LncRNA antisense to leucine rich repeat containing 55
NEAT1	Nuclear paraspeckle assembly transcript 1
DDX60	DExD/H-Box helicase 60
lnc-Lsm3b	LncRNA U6 snRNA-associated sm-like protein
lnc-MxA	LncRNA interferon-induced GTP-binding protein MxA
CFAP58-DT	Cilia and flagella associated protein 58 (CFAP58) divergent transcript
EGFR	Epidermal growth factor receptor
CD81	Cluster of differentiation 81
IFI6	Interferon alpha inducible protein 6
BISPR	BST2 IFN-stimulated positive regulator
LUARIS	LncRNA upregulator of antiviral response interferon signaling
hnRNPU	Heterogeneous nuclear ribonucleoprotein U
ITPRIP-1	Inositol 1,4,5-Trisphosphate Receptor Interacting Protein
ATF2	Activating transcription factor 2
HBV	Hepatitis B virus
cAMP	Cyclic adenosine monophosphate
NRIR	Negative regulator of the IFN response
CMPK2	Cytidine/uridine monophosphate kinase 2
CXCL10	C-X-C motif chemokine ligand 10
GCSIR	G protein-coupled receptor 55 (GPR55) cis regulatory suppressor of immune response RNA
EGOT	Eosinophil granule ontogeny transcript
EC	Endocannabinoid
SFV	Semliki Forest virus
CHC	Chronic HCV infection
LncRNA-ATB	Long noncoding RNA activated by TGFβ (transforming growth factor-beta)
COL1A1	Alpha-1 type I collagen
α-SMA	Alpha-smooth muscle actin
HCV-HCC	HCV-related HCC
PRLH1	p53-regulated lncRNA for homologous recombination (HR) repair 1
TCGA	The cancer genome atlas network
HDV	Hepatitis Delta virus
aHIF	LncRNA antisense to HIF1A (hypoxia-inducible factor 1 alpha)
PAR5/PWAR5	Prader Willi/Angelman region RNA 5
EZH2	Enhancer of zeste 2 polycomb repressive complex 2 subunit
TMEVPG1	Theiler’s murine encephalomyelitis virus persistence candidate gene 1
IFNG-AS1	IFNG antisense RNA 1
IL-23	Interleukin 23
HBx	HBV-encoded protein x
MALAT1	Metastasis-associated lung adenocarcinoma transcript 1
AFP	Alpha-fetoprotein
EVs	Extracellular vesicles
UCA1	Urothelial carcinoma associated-1
WRAP53	Trp-Asp (WD) repeat containing antisense to TP53 (tumor protein p53)
HEIH	HCC up-regulated EZH2-associated long non-coding RNA
TUG1	Taurine up-regulated 1
CASC2	Cancer susceptibility 2
HOTTIP	Homeobox A (HOXA) distal transcript antisense RNA
NOP2	Nucleolar protein 2
MYC	Myc proto-oncogene protein
NORAD	Non-coding RNA activated by DNA damage
Wee1	G2 checkpoint kinase