| Atg | Autophagy related proteins |
| Avt | Amino acid vacuolar transporter |
| Ccz1-Mon1 | Calcium caffeine zinc sensitivity 1-monensin sensitivity 1 complex |
| ESCRT | Endosomal sorting complexes required for transport |
| FYCO1 | FYVE (Zinc finger FYVE) and coiled-coil domain-containing protein 1 |
| HOPS | Homotypic vacuole fusion and protein sorting |
| MIPA | Micropexophagy-specific membrane apparatus |
| mTOR | Serine/threonine-protein kinase mTOR |
| Nvj1 | Nucleus-vacuole junction protein 1 |
| PAS | Phagophore assembly site or Pre-autophagosomal structures |
| Pep4 | Proteinase A |
| PI3P | Phosphatidylinositol 3-phosphate |
| PMN | Piecemeal microautophagy of the nucleus |
| Prb1 | Proteinase B |
| Prc | Tail-specific protease precursor |
| PVS | Perivacuolar structure |
| RAB | Ras-related protein |
| UBLC | Ubiquitin-like conjugation systems |
| Vac8 | Vacuolar protein 8 |
| Vam | Vesicle-associated membrane protein |
| VPEγ | Vacuolar processing enzyme γ |
| Vps1p | Vacuolar protein sorting-associated protein 1 |
| VSM | Vacuolar sequestering membranes |
| VTC | Vacuole transporter chaperone |
| Vti1 | Cis-Golgi membrane traffic |
| Ybr139 | Putative serine carboxypeptidase YBR139W |
| Ypt | GTP-binding proteins or Ras-like guanine nucleotide-binding proteins |