| IGT | Intracellular gene transfer |
| NUMT | Nuclear mitochondrial DNA sequences |
| NUPT | Nuclear plastid DNA sequences |
| IR | Inverted repeat |
| IRLC | Inverted repeat lacking clade |
| ORF | Open reading frame |
| NGS | Next-generation sequencing |
| DNA-RRR | DNA replication, recombination and repair |
| ML | Maximum likelihood |
| DSB | Double strand break |
| NCBI | National Center for Biotechnology Information |
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