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. 2020 Mar 13;21(6):1963. doi: 10.3390/ijms21061963

Table 2.

Prediction of relative abundance of the G4 topologies adopted by N.A. and A. samples.

Prediction of G4 Topologies Relative Abundance from SVD Analysis of CD Spectra
HEPES/Na+
Parallel (%) Hybrid (%) Antiparallel (%)
N.A. V7t1 100 1 0
A. V7t1 36 0 63
N.A. bisV7t1T7 72 7 20
A. bisV7t1T7 32 0 67
N.A. bisV7t1HEG2 78 0 23
A. bisV7t1HEG2 34 0 65
N.A. bisV7t1TEG2D 100 1 0
A. bisV7t1TEG2D 75 26 0
TRIS/K+
N.A. V7t1 100 1 0
A. V7t1 92 2 6
N.A. bisV7t1T7 97 4 0
A. bisV7t1T7 45 38 16
N.A. bisV7t1HEG2 100 1 0
A. bisV7t1HEG2 100 1 0
N.A. bisV7t1TEG2D 100 1 0
A. bisV7t1TEG2D 100 1 0

The prediction for V7t1 and its covalent dimers was obtained by singular value decomposition (SVD) analysis of the CD spectra recorded in both the selected HEPES/Na+ and TRIS/K+ buffer solutions, performed by exploiting the software developed by del Villar-Guerra et al. [60]. Deviations from 100% (±1%) are due to significant digits approximation of the values originally obtained by the simulations.