Table 2.
Molecular characterization of the amino acid permease (AAP) genes in Arabidopsis thaliana and Brassica napus
| Gene ID | Gene name | Block | CDS (bp) | Exon/ intron |
Amino acid (aa) |
Ka | Ks | Ka/Ks | Divergent time (Mya) |
|---|---|---|---|---|---|---|---|---|---|
| At1g58360 | AtAAP1 | D | 1458 | 6/5 | 485 | ||||
| BnaA01g21750D | BnaA1.AAP1 | D | 1524 | 6/5 | 507 | 0.0394 | 0.3931 | 0.1002 | 13.10 |
| BnaA03g59400D | BnaA3.AAP1 | D | 1623 | 8/7 | 540 | 0.0565 | 0.3987 | 0.1417 | 13.29 |
| BnaA09g14700D | BnaA9.AAP1 | D | 1440 | 6/5 | 479 | 0.0466 | 0.4043 | 0.1153 | 13.48 |
| BnaC01g42990D | BnaC1.AAP1 | D | 1524 | 6/5 | 507 | 0.0405 | 0.3747 | 0.1081 | 12.49 |
| BnaC04g18440D | BnaC4.AAP1 | D | 1455 | 6/5 | 484 | 0.0489 | 0.3854 | 0.1269 | 12.85 |
| BnaCnng25620D | BnaCn.AAP1 | D | 1440 | 6/5 | 479 | 0.0489 | 0.3965 | 0.1233 | 13.22 |
| At5g09220 | AtAAP2 | R | 1482 | 6/5 | 493 | ||||
| BnaA03g02650D | BnaA3.AAP2 | R | 1464 | 7/6 | 487 | 0.0293 | 0.4707 | 0.0622 | 15.69 |
| BnaA10g22670D | BnaA10.AAP2 | R | 1458 | 6/5 | 485 | 0.0366 | 0.5027 | 0.0728 | 16.76 |
| BnaC03g03750D | BnaC3.AAP2 | R | 1464 | 6/5 | 487 | 0.0313 | 0.4676 | 0.0669 | 15.59 |
| BnaC09g47230D | BnaC9.AAP2 | R | 1458 | 6/5 | 485 | 0.0437 | 0.4787 | 0.0913 | 15.96 |
| At1g77380 | AtAAP3 | E | 1431 | 7/6 | 476 | ||||
| BnaA07g33510D | BnaA7.AAP3 | E | 1431 | 7/6 | 476 | 0.0374 | 0.3945 | 0.0948 | 13.15 |
| BnaC06g38080D | BnaC6.AAP3a | E | 1431 | 7/6 | 476 | 0.0386 | 0.3865 | 0.0999 | 12.88 |
| BnaC06g38090D | BnaC6.AAP3b | E | 1431 | 7/6 | 476 | 0.0408 | 0.3847 | 0.1061 | 12.82 |
| At5g63850 | AtAAP4 | X | 1401 | 6/5 | 466 | ||||
| BnaA02g33930D | BnaA2.AAP4 | X | 1401 | 6/5 | 466 | 0.0304 | 0.5479 | 0.0555 | 18.26 |
| BnaA06g22970D | BnaA6.AAP4 | X | 1401 | 5/4 | 466 | 0.0392 | 0.4567 | 0.0858 | 15.22 |
| BnaC02g42740D | BnaC2.AAP4 | X | 1401 | 5/4 | 466 | 0.0306 | 0.5398 | 0.0567 | 17.99 |
| BnaC03g50500D | BnaC3.AAP4 | X | 1401 | 5/4 | 466 | 0.0423 | 0.4367 | 0.0969 | 14.56 |
| At1g44100 | AtAAP5 | C | 1443 | 5/4 | 480 | ||||
| BnaAnng17090D | BnaAn.AAP5 | C | 1248 | 4/3 | 415 | 0.0804 | 0.4964 | 0.1620 | 16.55 |
| BnaA08g04440D | BnaA8.AAP5 | C | 1446 | 5/4 | 481 | 0.0840 | 0.5449 | 0.1542 | 18.16 |
| BnaA05g18660D | BnaA5.AAP5 | C | 1464 | 5/4 | 487 | 0.0801 | 0.5204 | 0.1539 | 17.35 |
| BnaA10g08840D | BnaA10.AAP5 | C | 1431 | 5/4 | 476 | 0.1206 | 0.5015 | 0.2405 | 16.72 |
| BnaC06g00580D | BnaC6.AAP5 | C | 1431 | 5/4 | 476 | 0.1149 | 0.4909 | 0.2341 | 16.36 |
| At5g49630 | AtAAP6 | W | 1446 | 6/5 | 481 | ||||
| BnaCnng14480D | BnaCn.AAP6 | W | 1440 | 6/5 | 479 | 0.0560 | 0.4756 | 0.1177 | 15.85 |
| At5g23810 | AtAAP7 | Q | 1404 | 6/5 | 467 | ||||
| BnaA09g05130D | BnaA9.AAP7 | Q | 1413 | 7/6 | 470 | 0.1092 | 0.3543 | 0.3082 | 11.81 |
| BnaC09g04700D | BnaC9.AAP7 | Q | 1059 | 6/5 | 352 | 0.1169 | 0.3813 | 0.3066 | 12.71 |
| At1g10010 | AtAAP8 | A | 1428 | 6/5 | 475 | ||||
| BnaA06g38000D | BnaA6.AAP8a | A | 1401 | 6/5 | 466 | 0.1387 | 0.4977 | 0.2787 | 16.59 |
| BnaA06g38010D | BnaA6.AAP8b | A | 1389 | 6/5 | 462 | 0.1385 | 0.5880 | 0.2355 | 19.60 |
| BnaA09g57230D | BnaA9.AAP8a | A | 1446 | 6/5 | 481 | 0.1387 | 0.4977 | 0.2787 | 16.59 |
| BnaA09g57240D | BnaA9.AAP8b | A | 1584 | 6/5 | 527 | 0.1385 | 0.5880 | 0.2355 | 19.60 |
| BnaC05g49200D | BnaC5.AAP8a | A | 1410 | 7/6 | 469 | 0.1361 | 0.5426 | 0.2508 | 18.09 |
| BnaC05g49210D | BnaC5.AAP8b | A | 1449 | 6/5 | 482 | 0.1385 | 0.5880 | 0.2355 | 19.60 |
| BnaC08g42410D | BnaC8.AAP8a | A | 1446 | 6/5 | 481 | 0.1508 | 0.2216 | 0.6805 | 7.39 |
| BnaC08g42420D | BnaC8.AAP8b | A | 1515 | 7/6 | 504 | 0.1463 | 0.5326 | 0.2747 | 17.75 |
| BnaC08g42430D | BnaC8.AAP8c | A | 1446 | 6/5 | 481 | 0.1321 | 0.5257 | 0.2513 | 17.52 |
Note: CDS coding sequence, Ka non-synonymous nucleotide substitution rate, Ks synonymous nucleotide substitution rate