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. 2020 Apr 7;20:144. doi: 10.1186/s12870-020-02355-x

Table 4.

Genes up-regulated at least five-fold by TaZFP1B overexpression under drought stress

Gene number # Gene Annotation Fold change
Transcription-related proteins
39 TRIAE_CS42_3B_TGACv1_223209_AA0778000.3 LSD1 zinc finger > 100
40 TRIAE_CS42_5DL_TGACv1_434621_AA1438900.6 Scarecrow-like protein > 100
41 TRIAE_CS42_7BS_TGACv1_592226_AA1933690.4 Transcriptional corepressor LEUNIG > 100
42 TRIAE_CS42_3AS_TGACv1_212728_AA0702890.1 Transcriptional regulator RABBIT EARS 42,2
43 TRIAE_CS42_3AL_TGACv1_195838_AA0654650.3 Double-stranded RNA-binding protein 1 28,9
44 TRIAE_CS42_4DL_TGACv1_343075_AA1129010.3 Trihelix transcription factor GT-2 24,1
45 TRIAE_CS42_3AL_TGACv1_196955_AA0663930.1 Transcription factor PCF7 22,5
46 TRIAE_CS42_1DL_TGACv1_061611_AA0199920.1 DnaJ homolog subfamily B 20,5
47 TRIAE_CS42_6BS_TGACv1_514227_AA1657240.1 B-box zinc finger protein 19,7
48 TRIAE_CS42_2DL_TGACv1_159186_AA0534130.1 WRKY transcription factor 12 18,4
49 TRIAE_CS42_5BL_TGACv1_406061_AA1340040.1 CBFIVd-B4 18,4
50 TRIAE_CS42_2DL_TGACv1_159186_AA0534130.1 WRKY transcription factor 18,4
51 TRIAE_CS42_2AL_TGACv1_095147_AA0307480.1 Lateral organ boundaries transcription factor 16,4
52 TRIAE_CS42_5DL_TGACv1_435031_AA1445050.1 Ocs element-binding factor 14.2
53 TRIAE_CS42_2BS_TGACv1_147417_AA0482900.1 Zinc finger protein CONSTANS 15 15,8
54 TRIAE_CS42_1DL_TGACv1_062044_AA0207980.1 Transcription factor bHLH 112 15,1
55 TRIAE_CS42_7AL_TGACv1_558337_AA1792520.4 Zinc finger CCCH domain-containing protein 14,2
56 TRIAE_CS42_4DS_TGACv1_361293_AA1165150.6 BTB/POZ domain-containing protein 12,6
57 TRIAE_CS42_1DL_TGACv1_064769_AA0235650.2 DnaJ homolog subfamily C member 11,9
58 TRIAE_CS42_4AS_TGACv1_306719_AA1012420.1 Homeobox-leucine zipper protein HOX12 11,9
59 TRIAE_CS42_2AS_TGACv1_113089_AA0351070.5 Heterogeneous nuclear ribonucleoprotein 1 10,7
60 TRIAE_CS42_3DS_TGACv1_271642_AA0904520.1 Ethylene-responsive transcription factor CRF1 10,5
61 TRIAE_CS42_7DS_TGACv1_624521_AA2061810.2 Transcription factor bHLH 78 9,7
62 TRIAE_CS42_1DS_TGACv1_080414_AA0247520.3 DnaJ homolog subfamily B member 9,4
63 TRIAE_CS42_5DS_TGACv1_457055_AA1481570.1 Zinc finger protein C2H2 type 9,3
64 TRIAE_CS42_5BS_TGACv1_424687_AA1391330.5 Transcription factor bZIP 8,2
65 TRIAE_CS42_5BL_TGACv1_406061_AA1340050.1 Dehydration-responsive element-binding protein 7,4
66 TRIAE_CS42_1DS_TGACv1_080938_AA0255890.1 C3HC4 type zinc-finger (RING finger) 6,9
67 TRIAE_CS42_3B_TGACv1_224651_AA0799380.1 Lateral organ boundaries transcription factor 6,9
68 TRIAE_CS42_5DL_TGACv1_437778_AA1467310.5 Two-component response regulator 6,7
69 TRIAE_CS42_2DL_TGACv1_162669_AA0563320.1 Cold-responsive protein COR14a 6,2
70 TRIAE_CS42_5BS_TGACv1_424687_AA1391330.3 Transcription factor bZIP 5,9
71 TRIAE_CS42_4DL_TGACv1_345275_AA1152550.1 Homeobox-leucine zipper protein HOX13 5,7
72 TRIAE_CS42_7BS_TGACv1_592977_AA1946950.1 Transcription factor bHLH HEC2 5,6
73 TRIAE_CS42_7AS_TGACv1_569468_AA1816690.1 C2-C2 zinc finger 5,6
74 TRIAE_CS42_7BL_TGACv1_577432_AA1875300.1 VQ domain containing protein 5,5
75 TRIAE_CS42_5AL_TGACv1_375766_AA1226930.1 CBF IVd-A22 5,2
76 TRIAE_CS42_6DS_TGACv1_544607_AA1748880.1 B-box zinc finger protein 5,2
77 TRIAE_CS42_3AL_TGACv1_195166_AA0645630.3 Transcription factor bHLH87 5,1
Calcium binding protein, kinase or phosphatase
78 TRIAE_CS42_7BS_TGACv1_594052_AA1955780.1 Phytosulfokine receptor 1 84,1
79 TRIAE_CS42_5DL_TGACv1_434773_AA1441380.1 LRR receptor-like serine/threonine-protein kinase 35,9
80 TRIAE_CS42_4DS_TGACv1_362249_AA1178220.1 Calmodulin CML2 14,8
81 TRIAE_CS42_7BL_TGACv1_577549_AA1878500.1 Serine/threonine protein kinase 14,0
82 TRIAE_CS42_2DS_TGACv1_177289_AA0572410.1 EF-Hand type domain containing protein 9,2
83 TRIAE_CS42_6DL_TGACv1_527174_AA1700020.3 Mitogen-activated protein kinase kinase kinase 7,6
84 TRIAE_CS42_7AL_TGACv1_559296_AA1799010.1 Receptor-like protein kinase 6,9
Stress-related proteins
85 TRIAE_CS42_4AS_TGACv1_307024_AA1016270.3 BTB/POZ domain-containing protein NPY4 > 100
86 TRIAE_CS42_2AL_TGACv1_093753_AA0286070.3 Protein DJ-1 homolog D > 100
87 TRIAE_CS42_U_TGACv1_641289_AA2090920.5 Topless-related protein 1 > 100
88 TRIAE_CS42_3DS_TGACv1_272269_AA0918140.2 Disease resistance protein RPM1 > 100
89 TRIAE_CS42_4AS_TGACv1_308773_AA1029400.2 Pathogenesis-related protein > 100
90 TRIAE_CS42_7AS_TGACv1_569748_AA1823280.2 Cysteine synthase 86,2
91 TRIAE_CS42_5DL_TGACv1_433513_AA1415280.1 Dehydrin DHN2 73,3
92 TRIAE_CS42_4BS_TGACv1_328898_AA1095240.1 Pentatricopeptide repeat containing protein 67,2
93 TRIAE_CS42_2DL_TGACv1_163849_AA0564640.1 Wound induced protein 57,4
94 TRIAE_CS42_2AS_TGACv1_115694_AA0372890.2 Cytochrome P450 family protein 50,4
95 TRIAE_CS42_5BL_TGACv1_406032_AA1339460.1 Dehydrin DHN2 50,4
96 TRIAE_CS42_2AL_TGACv1_095873_AA0315400.1 Mediator of ABA-regulated dormancy 1 48,4
97 TRIAE_CS42_2DL_TGACv1_160571_AA0551860.1 Mediator of ABA-regulated dormancy 1 31,6
98 TRIAE_CS42_7BS_TGACv1_592018_AA1928290.1 Glutathione S-transferase 27,3
99 TRIAE_CS42_2DL_TGACv1_160490_AA0551070.1 Wound-responsive family protein 26,3
100 TRIAE_CS42_5AL_TGACv1_376309_AA1235150.1 Dehydrin DHN2 22,9
101 TRIAE_CS42_5AL_TGACv1_374112_AA1190770.1 Aspartic protease 22,7
102 TRIAE_CS42_4AL_TGACv1_290111_AA0981810.2 Tetratricopeptide repeat protein 17,4
103 TRIAE_CS42_7DL_TGACv1_602552_AA1960450.1 Tubby-like protein 17,0
104 TRIAE_CS42_6AS_TGACv1_486459_AA1561390.1 Auxin-responsive protein SAUR 16,9
105 TRIAE_CS42_2DL_TGACv1_158690_AA0524470.1 Late embryogenesis abundant protein 14,7
106 TRIAE_CS42_2DL_TGACv1_158690_AA0524470.1 Late embryogenesis abundant protein 14,6
107 TRIAE_CS42_4DL_TGACv1_343378_AA1133790.1 Defensin 14,1
108 TRIAE_CS42_5BL_TGACv1_404954_AA1316190.1 Cinnamoyl-CoA reductase 13,1
109 TRIAE_CS42_7AS_TGACv1_569113_AA1807500.2 BTB/POZ and MATH domain-containing protein 13,1
110 TRIAE_CS42_5DL_TGACv1_433130_AA1403020.1 Stress responsive A/B barrel domain-containing protein 12,9
111 TRIAE_CS42_U_TGACv1_640759_AA2072760.14 Cysteine proteinase superfamily protein 12,5
112 TRIAE_CS42_7AS_TGACv1_569033_AA1805230.1 ACT domain repeat protein 11,6
113 TRIAE_CS42_4BL_TGACv1_320342_AA1036020.1 Glycine-rich protein 11,3
114 TRIAE_CS42_5AL_TGACv1_376309_AA1235140.1 Dehydrin DHN1 11,2
115 TRIAE_CS42_4AL_TGACv1_293117_AA1000210.1 Aspartic protease 10,9
116 TRIAE_CS42_6BS_TGACv1_513372_AA1639240.1 F-box/kelch-repeat protein SKIP4 10,5
117 TRIAE_CS42_1BL_TGACv1_030562_AA0094080.1 Cytochrome P450 85A1 10,5
118 TRIAE_CS42_6DS_TGACv1_542552_AA1724150.1 Auxin-responsive protein SAUR71 10,4
119 TRIAE_CS42_5BL_TGACv1_406277_AA1343590.3 Cysteine proteinase superfamily protein 9,1
120 TRIAE_CS42_7DS_TGACv1_621863_AA2028000.1 Cytochrome c oxidase subunit 5B mitochondrial 8,9
121 TRIAE_CS42_5DL_TGACv1_434334_AA1434100.2 F-box/kelch-repeat protein 8,8
122 TRIAE_CS42_5DL_TGACv1_435810_AA1455180.2 Rhodanese-like domain-containing protein 8,1
123 TRIAE_CS42_5AL_TGACv1_376986_AA1242950.1 Glutathione S-transferase 7,8
124 TRIAE_CS42_7BS_TGACv1_591856_AA1923720.1 Aspartic protease 7,5
125 TRIAE_CS42_5DL_TGACv1_434499_AA1437000.1 Pentatricopeptide repeat-containing protein 7,2
126 TRIAE_CS42_6AL_TGACv1_471352_AA1507530.3 WD repeat-containing protein 6,1
127 TRIAE_CS42_6AL_TGACv1_471352_AA1507530.6 WD repeat-containing protein 6,1
128 TRIAE_CS42_3B_TGACv1_223361_AA0780920.2 Glutathione transferase GST 5,8
129 TRIAE_CS42_3AL_TGACv1_197123_AA0664910.3 Universal stress protein PHOS32 5,7
130 TRIAE_CS42_1BL_TGACv1_030249_AA0083800.1 Universal stress protein PHOS32 5,7
131 TRIAE_CS42_3AS_TGACv1_210945_AA0681930.1 AAA-protein family 5,5
132 TRIAE_CS42_1AL_TGACv1_001038_AA0023900.1 Universal stress protein PHOS 5,5
133 TRIAE_CS42_2AL_TGACv1_093314_AA0277190.2 Heat shock protein 5,3
134 TRIAE_CS42_3DL_TGACv1_249203_AA0841110.1 Abscisic stress-ripening protein 5,3
135 TRIAE_CS42_2AL_TGACv1_094123_AA0292860.2 Elicitor responsive gene 5,2
136 TRIAE_CS42_6AS_TGACv1_487227_AA1569190.1 Auxin-induced protein 5,0
Oxidation-reduction process
137 TRIAE_CS42_2DS_TGACv1_178485_AA0596270.1 Peroxidase 44,7
138 TRIAE_CS42_4AL_TGACv1_290177_AA0982590.1 Alcohol dehydrogenase ADH1A 23,1
139 TRIAE_CS42_7BL_TGACv1_576933_AA1860390.1 Defensin 19,0
140 TRIAE_CS42_2AS_TGACv1_112531_AA0340030.1 Flavin-containing monooxygenase 18,9
141 TRIAE_CS42_2DS_TGACv1_177840_AA0585640.1 Peroxidase 18,6
142 TRIAE_CS42_2BS_TGACv1_146806_AA0473250.1 Peroxidase 15,9
143 TRIAE_CS42_5AL_TGACv1_377290_AA1245640.4 NADPH oxidase 9,9
144 TRIAE_CS42_2DL_TGACv1_160970_AA0555660.1 Protochlorophyllide reductase A 7,7
145 TRIAE_CS42_2AL_TGACv1_096139_AA0317380.1 Hyoscyamine 6-dioxygenase 7,4
146 TRIAE_CS42_5AL_TGACv1_376972_AA1242830.1 Alcohol dehydrogenase ADH2H 6,9
147 TRIAE_CS42_2DL_TGACv1_158391_AA0517380.1 FAD-dependent urate hydroxylase-like 6,4
148 TRIAE_CS42_2AL_TGACv1_096158_AA0317510.1 Polyamine oxidase 4 6,0
149 TRIAE_CS42_2AL_TGACv1_096643_AA0320430.1 Galactose oxidase 5,9
150 TRIAE_CS42_7AS_TGACv1_570735_AA1840120.1 Thiosulfate sulfurtransferase 5,7
151 TRIAE_CS42_1AL_TGACv1_002876_AA0045790.1 Gibberellin 20 oxidase 2 5,5
152 TRIAE_CS42_3AL_TGACv1_194843_AA0640510.2 Selenium-binding protein 5,4
153 TRIAE_CS42_1BL_TGACv1_031952_AA0123300.2 Thioredoxin protein 5,0
Cell wall and membrane structure
154 TRIAE_CS42_U_TGACv1_694116_AA2161830.1 Xyloglucan endotransglucosylase/hydrolase > 100
155 TRIAE_CS42_1AL_TGACv1_000357_AA0009840.1 Pectinesterase 26,8
156 TRIAE_CS42_5AS_TGACv1_393897_AA1277020.1 Expansin-B3 19,0
157 TRIAE_CS42_5DL_TGACv1_433202_AA1405370.1 Remorin 8,2
158 TRIAE_CS42_6DL_TGACv1_527336_AA1702400.1 Protein WAX2 7,3
159 TRIAE_CS42_5AS_TGACv1_394403_AA1280080.3 Hydroxyproline-rich glycoprotein family protein 7,2
Cell cycle
160 TRIAE_CS42_2BL_TGACv1_130589_AA0414320.3 Protein laz1 > 100
161 TRIAE_CS42_U_TGACv1_640759_AA2072760.14 Cysteine proteinases superfamily protein 12,5
162 TRIAE_CS42_5BL_TGACv1_406277_AA1343590.3 Cysteine proteinases superfamily protein 9,1
163 TRIAE_CS42_3DL_TGACv1_249314_AA0845060.3 Mitotic spindle checkpoint protein MAD1 7,4
164 TRIAE_CS42_1BL_TGACv1_030567_AA0094200.2 Protein LOL1 7,3
165 TRIAE_CS42_5AL_TGACv1_375766_AA1226930.1 Protein LOL1 6,6
166 TRIAE_CS42_2DS_TGACv1_177975_AA0588450.1 Cyclin-D2–2 5,1
167 TRIAE_CS42_3DS_TGACv1_271852_AA0909480.1 Cell division cycle-associated protein 5,0
Transporters
168 TRIAE_CS42_3DL_TGACv1_250015_AA0860390.2 GABA transporter 1 > 100
169 TRIAE_CS42_3DL_TGACv1_249597_AA0852170.3 Bidirectional sugar transporter SWEET 86,3
170 TRIAE_CS42_2AL_TGACv1_093880_AA0288670.1 Non-specific lipid-transfer protein 16,2
171 TRIAE_CS42_5DL_TGACv1_432929_AA1394800.5 Heavy metal-associated isoprenylated protein 32 10,4
172 TRIAE_CS42_1DL_TGACv1_061859_AA0204490.1 Non-specific lipid-transfer protein 8,1
173 TRIAE_CS42_3AL_TGACv1_195744_AA0653320.1 Bidirectional sugar transporter SWEET 6,5
174 TRIAE_CS42_6DL_TGACv1_526901_AA1694680.2 Bidirectional sugar transporter SWEET 6,1
175 TRIAE_CS42_1AL_TGACv1_003689_AA0051080.1 Non-specific lipid-transfer protein 6,0
176 TRIAE_CS42_1DL_TGACv1_061102_AA0185280.1 Non-specific lipid-transfer protein 5,8
177 TRIAE_CS42_7BS_TGACv1_593410_AA1951130.1 Non-specific lipid-transfer protein 5,6
Post-translational protein modification
178 TRIAE_CS42_4DS_TGACv1_361658_AA1171150.4 E3 ubiquitin-protein ligase ARI1 9,1
179 TRIAE_CS42_3DS_TGACv1_272908_AA0926480.3 E3 ubiquitin-protein ligase 8,4
180 TRIAE_CS42_1AL_TGACv1_000329_AA0009100.2 Ubiquitin conjugation factor E4 protein 7,9
181 TRIAE_CS42_7BL_TGACv1_578537_AA1896750.2 Dolichyl-diphosphooligosaccharide protein glycosyltransferase subunit DAD1 7,1
Carbohydrate metabolism-related proteins
182 TRIAE_CS42_7BL_TGACv1_578713_AA1899080.1 Glucan endo-1,3-beta-glucosidase 3 > 100
183 TRIAE_CS42_3AL_TGACv1_194492_AA0634060.2 NADP-dependent malic enzyme > 100
184 TRIAE_CS42_3DL_TGACv1_249576_AA0851790.4 Beta-galactosidase 79,1
185 TRIAE_CS42_5DL_TGACv1_436125_AA1458320.1 Beta-glucosidase 53,9
186 TRIAE_CS42_2AS_TGACv1_112777_AA0345080.1 Transketolase 32,4
187 TRIAE_CS42_5BL_TGACv1_405377_AA1326060.1 Phosphoglycerate mutase-like protein 12,8
188 TRIAE_CS42_2BL_TGACv1_131851_AA0432880.2 Aldose 1-epimerase 10,2
189 TRIAE_CS42_3B_TGACv1_222532_AA0766530.4 ATP synthase subunit beta 6,6
190 TRIAE_CS42_2DL_TGACv1_158102_AA0509180.1 Phenolic glucoside malonyltransferase 6,2
191 TRIAE_CS42_5AS_TGACv1_392538_AA1260340.7 GDP-L-galactose phosphorylase 6,1
192 TRIAE_CS42_1DL_TGACv1_061598_AA0199620.1 Beta-galactosidase 7 4,7
Fatty acid metabolism-related proteins
193 TRIAE_CS42_3AS_TGACv1_210886_AA0680800.3 Sphingosine-1-phosphate lyase > 100
194 TRIAE_CS42_1AS_TGACv1_019138_AA0061500.2 GDSL esterase/lipase 8,8
195 TRIAE_CS42_1BL_TGACv1_030780_AA0100660.2 Phospholipase D 5,4
Nitrogen metabolism-related proteins
196 TRIAE_CS42_4AS_TGACv1_307728_AA1023060.1 Glutamine synthetase 6,4
Others
197 TRIAE_CS42_4DS_TGACv1_362426_AA1179710.6 Cyclin-like F-box domain containing protein > 100
198 TRIAE_CS42_1BS_TGACv1_050119_AA0167640.2 Unknown protein > 100
199 TRIAE_CS42_3AS_TGACv1_211314_AA0688450.2 WPP domain-interacting tail-anchored protein > 100
200 TRIAE_CS42_5DL_TGACv1_434415_AA1435460.1 TolB-like domain containing protein 94,1
201 TRIAE_CS42_6DL_TGACv1_528348_AA1713440.1 Unknown protein 84,4
202 TRIAE_CS42_5BL_TGACv1_406843_AA1350500.1 Unknown protein 58,7
203 TRIAE_CS42_5DL_TGACv1_433372_AA1411340.1 Tryptophan synthase alpha chain-like 52,7
204 TRIAE_CS42_1AS_TGACv1_019383_AA0065910.3 Isovaleryl-CoA dehydrogenase 39,6
205 TRIAE_CS42_4DL_TGACv1_343143_AA1130470.1 Unknown protein 27,7
206 TRIAE_CS42_5DL_TGACv1_435042_AA1445250.2 Obg-like ATPase 1 27,1
207 TRIAE_CS42_1AS_TGACv1_019803_AA0071620.1 Cyclin-like F-box domain containing protein 23,5
208 TRIAE_CS42_2BL_TGACv1_130998_AA0421050.2 Peptidylprolyl isomerase 17,2
209 TRIAE_CS42_3DL_TGACv1_250372_AA0867150.1 Unknown protein 15,9
210 TRIAE_CS42_3AL_TGACv1_195382_AA0648850.1 Unknown protein 13,9
211 TRIAE_CS42_4BL_TGACv1_322190_AA1069510.1 Anthocyanidin 3-O-glucosyltransferase 12,2
212 TRIAE_CS42_4BL_TGACv1_321444_AA1060550.2 Elongator complex protein 6 10,8
213 TRIAE_CS42_5DL_TGACv1_433709_AA1420080.1 Nitrile-specifier protein 1 10,1
214 TRIAE_CS42_5AL_TGACv1_375015_AA1213930.1 Actin-depolymerizing factor 10 9,7
215 TRIAE_CS42_7DL_TGACv1_602612_AA1962750.1 Arogenate dehydrogenase 2 9,4
216 TRIAE_CS42_3DL_TGACv1_249368_AA0846860.1 Peptidase C1A, papain family protein 7,5
217 TRIAE_CS42_5AL_TGACv1_375655_AA1225200.2 deSI-like protein 7,3
218 TRIAE_CS42_3B_TGACv1_224606_AA0798680.1 Aromatic-ring hydroxylase domain containing protein 7,1
219 TRIAE_CS42_5BL_TGACv1_404868_AA1313220.1 Nitrile-specifier protein 1 5,9
220 TRIAE_CS42_4DL_TGACv1_343042_AA1128220.1 Golgin subfamily A member 5,8
221 TRIAE_CS42_1DL_TGACv1_061281_AA0191130.2 Plant UBX domain-containing protein 10 5,6
222 TRIAE_CS42_1AL_TGACv1_000217_AA0006430.1 Putative protein of unknown function (DUF640) 5,4
223 TRIAE_CS42_2AL_TGACv1_092997_AA0269140.3 Imidazoleglycerol-phosphate dehydratase 5,4
224 TRIAE_CS42_5BL_TGACv1_404429_AA1299570.1 Protein WVD2 5,2
225 TRIAE_CS42_5AL_TGACv1_376738_AA1240450.1 F-box domain, cyclin-like domain containing protein 5,0

Fold change, 1B-OEX to wild-type ratio. The gene numbers (#) are used in the text