Table 2. Overview of chikungunya virus sequence data provided by EVD-LabNet, 2019.
Reference Laboratories | GeneBank accession number | 5’-3’ ends of sequenced amplicona | Sample Collection Date | Site of Origin of the imported case (if known) |
---|---|---|---|---|
Austria, Vienna.AUT/02.2019 | MN053046 | 10211–10917 | 7 February 2019 | Unknown |
Austria, Vienna.AUT/09.2019 | MN053047 | 10194–10932 | 25 February 2019 | Thailand-Krabi |
Austria, Vienna.AUT/09.2019/2 | MN053048 | 10194–10985 | 25 February 2019 | Thailand-Krabi |
Austria, Vienna.AUT/12.2019 | MN053049 | 10194–10899 | 21 March 2019 | Thailand-Krabi |
Austria, Vienna.AUT/12.2019/2 | MN053050 | 10194–10881 | 21 March 2019 | Thailand-Krabi |
Finland, Helsinki-1 | MN075149 | Full genome | 25 February 2019 | Thailand-Phuket |
Finland, Helsinki-2 | MN075150 | Full genome | 27 February 2019 | Thailand-Phuket |
Italy (Bologna) | MN047314 | 9994–11312 | 2 March 2019 | Unknown |
Italy (Rome, INMI) | MK986662 | 10180–10922 | 4 February 2019 | Unknown |
Israel (Tel Aviv) | MK992771 | 10525–11170 | 17 February 2019 | Unknown |
Slovenia (Ljubljana) | MK848202 | Full genome | 21 November 2018 | Unknown |
Spain (Barcelona) | MN080498 | 10254–10712 | 6 September 2018 | Unknown |
EVD-LabNet: Emerging Viral Diseases-Expert Laboratory Network.
a Reference sequence for determination of 5’-3’ ends of sequenced amplicons: CHIKV S27 – ECSA Africa prototype, GeneBank accession number: AF369024.