Table 2.
Top 5 SNPs associated with carcass traits in Hanwoo.
| Trait | SNP_ID | Chr | Position | p-Value | SNP Effect | Gene | Type |
|---|---|---|---|---|---|---|---|
| Backfat | rs109467607 | 19 | 7617020 | 8.89E-11 | 0.0579 | NOG | Promoter |
| Thickness | rs110172746 | 19 | 7617964 | 8.89-11 | 0.0323 | NOG | Promoter |
| rs109749187 | 19 | 7618889 | 8.89E-11 | 0.00256 | NOG | Promoter | |
| rs110056766 | 14 | 7616793 | 1.50E-10 | 0.0354 | NOG | Promoter | |
| rs109266249 | 19 | 7617322 | 1.50E-10 | 0.0311 | NOG | Promoter | |
| Carcass | rs210030313 | 14 | 25052440 | 4.12E-30 | 0.0849 | CHCHD7 | Promoter |
| Weight | rs209809798 | 14 | 26269386 | 1.07E-27 | 0.002 | UBXN2B | Promoter |
| rs210867053 | 14 | 34422595 | 2.82E-16 | 0.0006 | C8orf34 | Promoter | |
| rs210421179 | 14 | 34425147 | 2.82E-16 | 0.001 | C8orf34 | Promoter | |
| rs208243667 | 14 | 23986995 | 2.33E-14 | 0.004 | RP1 | Promoter | |
| Eye Muscle Area | rs210030313 | 14 | 25052440 | 3.54E-08 | 0.4121 | CHCHD7 | Promoter |
| rs209809798 | 14 | 26269386 | 5.00E-07 | 0.06 | UBXN2B | Promoter | |
| rs41734611 | 14 | 29827599 | 3.05E-06 | 0.007 | YTHDF3 | Promoter | |
| rs108943384 | 14 | 29828860 | 3.05E-06 | 0.0097 | YTHDF3 | Promoter | |
| rs110364554 | 14 | 29829523 | 3.05E-06 | 0.0051 | YTHDF3 | Promoter | |
| Marbling Score | Novel | 22 | 11888027 | 8.23E-06 | 8.49E-03 | ACVR2B | Non-synonymous |
| rs109436056 | 20 | 36013931 | 1.08E-05 | 9.17E-03 | EGFLAM | Non-synonymous | |
| rs109353762 | 11 | 30965508 | 1.08E-05 | 5.42E-03 | ENSBTAG00000027015 | Promoter | |
| rs109921982 | 19 | 50470876 | 1.17E-05 | 3.40E-03 | ZNF750 | Promoter | |
| rs109995364 | 11 | 30963318 | 1.27E-05 | 6.31E-03 | ENSBTAG00000027015 | Promoter |