Table 2. Summary of labeled-ligand methods discussed in this review.
$–$$$$ represents the cost of equipment, consumables, and protein sample.
| Description | FA | MST | FRET | Radiolabeling |
|---|---|---|---|---|
| Mechanism | Polarized light is used to analyze the change in rotational time of molecules. | This method is based on measuring the movement of molecules in a temperature gradient. | Fluorescence measurements of donor/acceptor pairs in close proximity (energy transfer). | Radioactive labeled ligand is applied to detect its binding to a receptor. |
| Affinity range | nm–mm | pm–mm | nm–mm | nm–mm |
| Thermodynamics | Yesb | Yesb | No | No |
| Kinetics | Yesc | No | No | No |
| Sensitivitya | High | High | Medium | High |
| Advantages | The method is label-free compatible using intrinsic fluorescence. Small amount of sample. | Very low quantities are required. Label-free compatibility due to intrinsic fluorescence. | The use of fluorescence tags in both, receptor and ligand facilitate accurate concentration measurements. | Very useful in systems with limited amount of receptor and/or ligand due to high sensitivity. Compatible with membrane proteins. |
| Limitations | Small differences in size between the bound and unbound forms. | Hydrophobic fluorescent dyes can produce unspecific binding. | The FRET pair needs to be in close proximity for efficient energy transfer. | Requires the use of radioactive material. |
| Financial aspects | Requires fluorescence spectrophotometer with light polarizers. | Requires specialized equipment and capillaries and a protein labeling kit. | Requires a spectrophotometer with desired filters. | Requires radioactive labeling, specific facility and licensing. |
| $$$ | $$$ | $$ | $$ |
Sensitivity is relative to the required sample concentration.
Thermodynamic parameters can be obtained through the measurement of Kd at different temperatures.
Through time-resolved fluorescence anisotropy.