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. Author manuscript; available in PMC: 2021 Jan 5.
Published in final edited form as: J Comput Chem. 2019 Oct 17;41(1):56–68. doi: 10.1002/jcc.26078

Table 2:

Binding free energies of R-(−)-Mandelic acid calculated from BEDAM, SDM, and MSDM. “Total” in SDM is calculated by Eq (13).

ΔGo
BEDAM −1.246 ± 0.04
Simple restraint BK restraint
SDM ΔGo UP state −0.233 ± 0.05 −0.574 ± 0.10
ΔGo DOWN state −1.331 ± 0.05 −1.021 ± 0.07
Total (Eq.13) −1.419 ± 0.04 −1.252 ± 0.06
MSDM (starting from UP state) −1.059 ± 0.06 −1.370 ± 0.07
MSDM (starting from DOWN state) −1.284 ± 0.06 −1.298 ± 0.05