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. Author manuscript; available in PMC: 2021 Jan 5.
Published in final edited form as: J Comput Chem. 2019 Oct 17;41(1):56–68. doi: 10.1002/jcc.26078

Table 6:

Parameters for the BK restraint potential. S1, S2 and S3 are βCD–Ethyl ptolylacetate, βCD–R-(−)-Mandelic acid and βCD–Methyl 2-anilinoacetate systems, respectively. UP and DOWN stand for the restraint position of UP state and DOWN state, respectively. All distances are in angstroms and all angles are in degrees. The all force constants, kraA, kθA, kθB, kφA, kφB and kφC, are 5.0 kcal/(mol Å2) and 5.0 kcal/(mol rad2), respectively. These parameters are used for six harmonic potentials in Subsection “BK restraint model”.

S1 (UP) S1 (DOWN) S2 (UP) S2 (DOWN) S3 (UP) S3 (DOWN)
raA,0 4.433 6.000 5.194 6.741 5.039 5.956
θA,0 78.972 54.029 66.925 58.042 61.105 48.285
θB,0 110.527 128.413 109.115 115.112 106.634 115.733
ϕA,0 114.986 −36.844 157.447 8.617 46.294 −65.854
ϕB,0 111.075 −52.454 127.122 −97.071 74.013 −85.353
ϕC,0 −104.163 −53.823 −101.645 −11.673 −70.201 −52.658