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. Author manuscript; available in PMC: 2020 May 14.
Published in final edited form as: J Chem Theory Comput. 2019 Apr 12;15(5):3134–3152. doi: 10.1021/acs.jctc.9b00061

Table 2.

Vertical Excitation Energies (ΔES1–S0, kcal mol−1 and eV in Italic and Parentheses), Maximum Absorption Wavelengths (λmaxa, nm), and Oscillator Strength (fOsc)a

experimental
calculatedb
error
model ΔES1S0Exp λmaxa,Exp ΔES1–S0 λmaxa fOsc ΔΔES1S0Exp Δλmaxa,Exp
a-ARMdefault
m-Set
ASRAT-1 52.0 (2.25) 550 52.31.4 (2.27) 547 1.29 0.3 (0.01) −3
ASRAT-2d 52.0 (2.25) 550 54.02.3 (2.34) 529 1.25 2.0 (0.09) −21
ASR13C-1d 53.2 (2.31) 537 55.00.5 (2.38) 520 1.04 1.8 (0.08) −17
ASR13C-2 53.2 (2.31) 537 54.20.4 (2.35) 528 1.08 1.0 (0.04) −9
bRAT 50.3 (2.18) 568 53.20.1 (2.30) 537 1.25 2.9 (0.12) −31
bR13C 52.2 (2.26) 548 53.30.1 (2.31) 536 0.94 1.1 (0.05) −12
bathoRh 54.0 (2.34) 529 56.20.3 (2.44) 509 0.96 2.2 (0.10) −20
BPR 58.3 (2.53) 490 63.70.2 (2.76) 449 0.57 5.4 (0.24) −41
ChRC1C2 62.4 (2.71) 458 76.92.4 (3.33) 372 0.88 14.5 (0.63) −86
Rh 57.4 (2.49) 498 57.70.7 (2.50) 496 0.87 0.3 (0.01) −2
SqRh 58.5 (2.54) 489 60.90.2 (2.64) 469 0.80 2.4 (0.10) −20
hMeOp 60.4 (2.62) 473 61.21.7 (2.65) 467 0.72 0.8 (0.04) −6
a-Set
ASRAT-D217E 51.8 (2.25) 552 52.01.1 (2.25) 550 1.29 0.2 (0.01) −2
Arch1 50.3 (2.18) 568 50.51.2 (2.19) 567 1.23 0.1 (0.01) −1
Arch2 52.0 (2.25) 550 54.50.6 (2.36) 525 1.23 2.5 (0.11) −25
ChR2 60.8 (2.64) 470 79.92.3 (3.46) 358 0.70 19.1 (0.83) −112
ChR2-C128T 59.0 (2.56) 485 79.71.1 (3.45) 360 0.65 20.7 (0.90) −126
KR2-1 54.5 (2.36) 525 69.90.9 (3.03) 409 1.46 15.5 (0.67) −116
KR2-2d 54.5 (2.36) 525 69.60.7 (3.02) 411 1.41 14.9 (0.66) −114
NM-R3 55.3 (2.40) 517 56.10.1 (2.44) 509 1.01 0.8 (0.04) −8
C1R 55.3 (2.40) 517 55.20.2 (2.39) 518 1.05 −0.2 (−0.01) +1
SRII 57.5 (2.49) 497 58.00.9 (2.51) 493 1.11 0.5 (0.02) −4
SqbathoRh 53.9 (2.34) 530 55.50.2 (2.41) 515 1.08 1.6 (0.07) −15
AARh 56.3 (2.44) 508 59.00.8 (2.56) 485 0.79 2.7 (0.12) −23
BCone 66.5 (2.88) 430 67.80.1 (2.94) 430 0.63 1.3 (0.06) −8
GCone 53.4 (2.32) 535 55.01.3 (2.39) 519 0.90 1.6 (0.07) −16
RCone 49.7 (2.16) 575 58.61.6 (2.54) 486 0.78 8.8 (0.38) −87
mMeOp 61.2 (2.65) 467 62.50.2 (2.71) 457 0.76 1.3 (0.06) −10
PoXeRAT 50.3 (2.18) 568 50.50.5 (2.19) 566 1.48 0.2 (0.01) −2
PoXeR13C 52.1 (2.26) 549 54.40.2 (2.36) 525 1.07 2.2 (0.10) −24
Rh Mutants Set
Rh-A292S 58.2 (2.54) 491 58.70.3 (2.54) 487 0.86 0.5 (0.01) −1
Rh-A269T 55.6 (2.41) 514 56.10.6 (2.44) 510 0.91 0.5 (0.02) −4
Rh-E113D 56.1 (2.43) 510 55.40.4 (2.40) 516 0.91 −0.7 (−0.03) +6
Rh-E122Q 59.6 (2.58) 480 60.00.5 (2.60) 477 0.81 0.4 (0.02) −3
Rh-F261Y 56.1 (2.43) 510 56.20.8 (2.44) 509 0.86 0.1 (0.01) −1
Rh-G90S 58.4 (2.53) 489 56.80.7 (2.46) 503 0.90 −1.6 (−0.07) +14
Rh-T94S 57.9 (2.51) 494 58.00.7 (2.51) 493 0.86 0.1 (0.00) −1
Rh-T118A 59.1 (2.56) 484 59.70.4 (2.59) 479 0.86 0.6 (0.03) −5
Rh-W265Y 59.0 (2.57) 485 58.80.6 (2.55) 486 0.88 −0.2 (−0.02) +1
Rh-W265F 59.6 (2.58) 480 60.00.4 (2.60) 476 0.83 0.5 (0.02) −4
Rh-D83N-E122Q 60.2 (2.61) 475 61.10.6 (2.65) 468 0.76 0.9 (0.04) −7
Rh-A292S-A295S-A299C 59.1 (2.56) 484 58.60.7 (2.54) 488 0.86 −0.5 (−0.02) +4
ADmax 20.7 (0.89)
MAE ± MAD of ΔΔES1S0Exp 3.0 ± 3.4 (0.13 ± 0.15)
MAE ± MAD of ||Trend Dev.|| 2.5 ± 1.2 (0.11 ± 0.05)
a-ARMcustomized
KR2-2(c) 54.5 (2.36) 525 55.90.4 (2.43) 511 0.91 1.5 (0.06) −14
BPR(c) 58.3 (2.53) 490 57.20.3 (2.48) 500 0.75 −1.1 (−0.05) 10
RCone(c) 49.7 (2.16) 575 49.91.3 (2.16) 572 1.12 0.2 (0.01) −3
bRAT(c) 50.3 (2.18) 568 50.70.3 (2.20) 564 1.43 0.3 (0.02) −4
bRAT(c-2) 50.3 (2.18) 568 50.40.5 (2.18) 567 1.37 0.1 (0.00) −1
ChRC1C2(c) 62.4 (2.71) 458 63.80.8 (2.76) 449 0.88 1.3 (0.06) −9
ChR2(c) 60.8 (2.64) 470 63.31.2 (2.70) 459 0.77 1.4 (0.06) −11
ChR2-C128T(c) 59.0 (2.56) 485 59.20.3 (2.57) 483 0.95 0.3 (0.01) −2
ADmaxc 2.7 (0.12)
MAE ± MAD of ΔΔES1S0Expc 0.9 ± 0.7 (0.04 ± 0.03)
MAE ± MAD of ||Trend Dev.||c 0.7 ± 0.5 (0.03 ± 0.02)
a

Calculated using the a-ARMdefault and the a-ARMcustomized approaches. Differences between calculated and experimental data (ΔΔES1S0Exp, Δλmaxa,Exp) are also presented.

b

Average value of 10 replicas, along with the corresponding standard deviation given as subindex.

c

For BPR, bRAT, ChRC1C2, ChR2, ChR2-C128T, RCone, and KR2-2 a-ARMcustomized are considered.

d

ASRAT-2, ASR13C-1, KR2-1, and bRAT(c-2) are excluded from the statistical analysis.