Table 2. Correlations between allele frequencies in individual genotypes and pool-seq.
| Colony/pool type | Individual depth (raw reads; average and std. dev.) | Pool depth (raw reads) | Number of SNPs | Correlation |
|---|---|---|---|---|
| RAD-seq Colony 48 | 26 ± 38X | 3.7X | 2,232 | 0.709 |
| RAD-seq Colony 49 | 12 ± 10X | 6.0X | 2,966 | 0.774 |
| RAD-seq Colony 50 | 11 ± 11X | 19X | 3,254 | 0.770 |
| WG-seq normalized pool-10-1 | 6.4 ± 2.2X | 34X | 833,463 | 0.938 |
| WG-seq normalized pool-10-2 | 38X | 833,479 | 0.931 | |
| WG-seq normalized pool-30 | 27X | 833,080 | 0.937 | |
| WG-seq unnormalized pool-legs | 26X | 833,208 | 0.938 |