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. 2019 Nov 25;36(7):2001–2008. doi: 10.1093/bioinformatics/btz867

Fig. 2.

Fig. 2.

The PAM search. Searching for the PAM NGG in the genome starts by matching the base A at position 0 in the genome with the root children T, G, C and A of the pattern matching machine. This example illustrates the first 11 transitions of the automata that correspond to the identification of three candidate targets (0, 5 and 6). For more details see Supplementary File S1 Section S2