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. 2020 Mar 22;8(3):448. doi: 10.3390/microorganisms8030448

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© 2020 by the authors.

Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).

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Blast atlas (A—circular) showing sequences similarity and diversity among true ESBL and presumptive non-ESBL E. coli using E. coli MG1655 as a reference: Isolates shown in this analysis are all cattle-derived (cattle feces, catch basins, surface water, and processing plant) and do not include any human-derived presumptive ESBL-EC because WGS did not identify any non-ESBL-EC from humans or municipal sewage sources based on the presence of bla_SHV, bla_TEM, bla_OXA, or bla_CTX-M. Inner ring comprises GC skew, GC content, and sequence of reference E. coli MG1655, while middle and outer rings comprise ESBL and non-ESBL E. coli, respectively.