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. 2020 Feb 11;10(4):1297–1308. doi: 10.1534/g3.119.400957

Table 1. Genetic diversity parameters for 193 Camelina genotypes belonging to 8 species. The numbers in parenthesis indicate range.

Subgenome Chromosome Total SNP Filtered SNP Gene Diversity PIC
SGI Chr14 5754 263 0.117 (0.021-0.499) 0.103 (0.020-0.375)
Chr7 6280 235 0.130 (0.021-0.499) 0.114 (0.021-0.374)
Chr19 5209 298 0.111 (0.021-0.500) 0.098 (0.020-0.375)
Chr4 5462 271 0.127 (0.021-0.500) 0.111 (0.021-0.375)
Chr8 5535 309 0.101 (0.021-0.500) 0.091 (0.020-0.375)
Chr11 9593 550 0.120 (0.021-0.500) 0.105 (0.021-0.410)
Subtotal 37833 1926 0.118 (0.021-0.500) 0.104 (0.020-0.410)
SGII Chr3 3642 166 0.117 (0.021-0.498) 0.102 (0.021-0.374)
Chr16 4333 207 0.135 (0.021-0.500) 0.118 (0.021-0.375)
Chr1 3406 195 0.112 (0.021-0.495) 0.101 (0.020-0.372)
Chr6 3477 153 0.146 (0.021-0.500) 0.126 (0.021-0.375)
Chr13 3337 146 0.110 (0.021-0.499) 0.097 (0.021-0.375)
Chr10 3614 208 0.119 (0.021-0.500) 0.104 (0.021-0.375)
Chr18 2740 167 0.111 (0.021-0.495) 0.099 (0.021-0.373)
Subtotal 24549 1242 0.122 (0.021-0.498) 0.107 (0.021-0.374)
SGIII Chr17 5200 139 0.102 (0.021-0.397) 0.094 (0.021-0.318)
Chr5 4993 156 0.137 (0.021-0.500) 0.120 (0.021-0.375)
Chr15 4726 152 0.082 (0.021-0.406) 0.075 (0.021-0.324)
Chr9 6603 186 0.084 (0.022-0.499) 0.076 (0.022-0.374)
Chr20 5031 105 0.089 (0.021-0.494) 0.079 (0.021-0.372)
Chr2 4451 122 0.099 (0.021-0.498) 0.089 (0.021-0.374)
Chr12 6450 188 0.106 (0.021-0.494) 0.093 (0.021-0.372)
Subtotal 37454 1048 0.100 (0.021-0.470) 0.089 (0.021-0.359)
Scaffolds 2908 52
Total SNPs 102744 4268 0.114 (0.020-0.500) 0.101 (0.000-0.410)