Table 1. Genetic diversity parameters for 193 Camelina genotypes belonging to 8 species. The numbers in parenthesis indicate range.
Subgenome | Chromosome | Total SNP | Filtered SNP | Gene Diversity | PIC |
---|---|---|---|---|---|
SGI | Chr14 | 5754 | 263 | 0.117 (0.021-0.499) | 0.103 (0.020-0.375) |
Chr7 | 6280 | 235 | 0.130 (0.021-0.499) | 0.114 (0.021-0.374) | |
Chr19 | 5209 | 298 | 0.111 (0.021-0.500) | 0.098 (0.020-0.375) | |
Chr4 | 5462 | 271 | 0.127 (0.021-0.500) | 0.111 (0.021-0.375) | |
Chr8 | 5535 | 309 | 0.101 (0.021-0.500) | 0.091 (0.020-0.375) | |
Chr11 | 9593 | 550 | 0.120 (0.021-0.500) | 0.105 (0.021-0.410) | |
Subtotal | 37833 | 1926 | 0.118 (0.021-0.500) | 0.104 (0.020-0.410) | |
SGII | Chr3 | 3642 | 166 | 0.117 (0.021-0.498) | 0.102 (0.021-0.374) |
Chr16 | 4333 | 207 | 0.135 (0.021-0.500) | 0.118 (0.021-0.375) | |
Chr1 | 3406 | 195 | 0.112 (0.021-0.495) | 0.101 (0.020-0.372) | |
Chr6 | 3477 | 153 | 0.146 (0.021-0.500) | 0.126 (0.021-0.375) | |
Chr13 | 3337 | 146 | 0.110 (0.021-0.499) | 0.097 (0.021-0.375) | |
Chr10 | 3614 | 208 | 0.119 (0.021-0.500) | 0.104 (0.021-0.375) | |
Chr18 | 2740 | 167 | 0.111 (0.021-0.495) | 0.099 (0.021-0.373) | |
Subtotal | 24549 | 1242 | 0.122 (0.021-0.498) | 0.107 (0.021-0.374) | |
SGIII | Chr17 | 5200 | 139 | 0.102 (0.021-0.397) | 0.094 (0.021-0.318) |
Chr5 | 4993 | 156 | 0.137 (0.021-0.500) | 0.120 (0.021-0.375) | |
Chr15 | 4726 | 152 | 0.082 (0.021-0.406) | 0.075 (0.021-0.324) | |
Chr9 | 6603 | 186 | 0.084 (0.022-0.499) | 0.076 (0.022-0.374) | |
Chr20 | 5031 | 105 | 0.089 (0.021-0.494) | 0.079 (0.021-0.372) | |
Chr2 | 4451 | 122 | 0.099 (0.021-0.498) | 0.089 (0.021-0.374) | |
Chr12 | 6450 | 188 | 0.106 (0.021-0.494) | 0.093 (0.021-0.372) | |
Subtotal | 37454 | 1048 | 0.100 (0.021-0.470) | 0.089 (0.021-0.359) | |
Scaffolds | 2908 | 52 | |||
Total SNPs | 102744 | 4268 | 0.114 (0.020-0.500) | 0.101 (0.000-0.410) |