Table 4. Presence of Apicomplexa-assigned sequences in selected chordate genome assemblies.

Species	Accession		Date	Span (Mb)
	Blob- ToolKit	GCA		Apicomplexa	Chordata	Total
Colinus virginianus	AWGT02	GCA_000599465.2	2017a	48.0	1074	1254
Crypturellus cinnamomeus	PTEZ01	GCA_003342915.1	2018b	59.9	1017	1122
Mus musculus	AAHY01	GCA_000002165.1	2009c	188.9	2738	3251
Mus musculus	LXEJ02	GCA_003774525.2	2018d	0.0	2687	2801
Physeter catodon	AWZP01	GCA_000472045.1	2013e	0.0	2279	2280
Physeter catodon	UEMC01	GCA_900411695.1	2018f	4.3	2472	2512
Physeter catodon	PGGR02	GCA_002837175.2	2019g	4.3	2472	2512
Piliocolobus tephrosceles	PDMG02	GCA_002776525.2	2018h	33.3	2976	3038
Rattus norvegicus	AAHX01	GCA_000002265.1	2006i	15.4	2699	2932
Rattus norvegicus	AABR07	GCA_000001895.4	2014j	0.2	2869	2870

a. (Oldeschulte et al. 2017)

b. (Sackton et al. 2019)

c. (Mural et al. 2002)

d. Most recent non-chromosomal assembly (see https://www.ncbi.nlm.nih.gov/assembly/GCA_003774525.2)

e. (Warren et al. 2017)

f. (see https://www.ncbi.nlm.nih.gov/assembly/GCA_900411695.1)

g. (see https://www.ncbi.nlm.nih.gov/assembly/GCA_000472045.1)

h. (see https://www.ncbi.nlm.nih.gov/assembly/GCA_000472045.1)

i. (Florea et al. 2005)

j. (Gibbs et al. 2004)