Table 1. Top Compounds with Stronger Binding Affinities with the FosX Protein than Fosfomycina.
name | score | Hbond | Hphob | VwInt | Eintl | Dsolv | SolEl | mfScore | dTSsc | x log P3-AA | solubility |
---|---|---|---|---|---|---|---|---|---|---|---|
chicoric acid | –22.0132 | –5.89096 | –3.48015 | –19.7111 | 0.516713 | 16.0599 | –0.6382 | –42.8735 | 1.776343 | 2 | NA |
marein | –21.2412 | –19.7007 | –4.36088 | –34.2541 | 19.88202 | 44.29087 | 25.80296 | –95.8018 | 1.96109 | 0.7 | NA |
caffieic acid | –21.1092 | –7.84353 | –2.36317 | –19.0568 | 1.295344 | 12.20363 | 13.40166 | –82.837 | 1.221385 | 1.2 | 1 mg/mL |
N-carbamimidoyl-2-(2,6-dichlorophenyl)acetamide | –19.6856 | –5.75583 | –2.79432 | –16.2979 | 0 | 12.17383 | 3.206563 | –18.1895 | 0.507306 | 2.2 | NA |
chlorogenic acid | –17.9415 | –13.4456 | –3.72354 | –23.0387 | 17.36799 | 21.76005 | 17.98263 | –148.516 | 1.791441 | –0.4 | 40 mg/mL |
2′,5′-dihydroxy-4-methoxychalcone | –15.8542 | –5.88801 | –4.98774 | –29.9978 | 1.992762 | 17.59366 | 27.25938 | –24.5201 | 1.427804 | 3.5 | NA |
4,2′,5′-trihydroxychalcone | –14.5402 | –5.80241 | –4.17045 | –27.9698 | 2.67159 | 18.61023 | 23.24728 | –12.7586 | 1.333933 | 3.2 | NA |
plumbagin | –13.577 | –8.81215 | –3.17567 | –9.75784 | 2.856866 | 14.22039 | 12.46037 | –102.235 | 1.45787 | 2.3 | NA |
l-mimosine | –12.9844 | –10.075 | –2.20455 | –16.8497 | 0.878521 | 19.13007 | 20.54147 | –102.074 | 1.560315 | –3.5 | slightly soluble in water |
fosfomycin | 1.3945 | –3.67585 | –1.54743 | –6.8822 | 0.186757 | 14.94213 | 8.325324 | –41.929 | 1.229387 |
Note: the score of each ligand indicates the ligand–receptor binding affinity (the lower the better). Other scores evaluate various energies between the ligand and protein, e.g., hydrogen bond energy (Hbond), hydrophobic energy in exposing a surface to water (Hphob), van der Waals interaction energy (VwInt), internal conformation energy of the ligand (Eintl), desolvation of exposed H-bond donors and acceptors (Dsolv), solvation electrostatics energy change upon binding (SolEl), loss of entropy (dTSsc), and potential of mean force score (mfScore).42x log P3-AA values and solubility were obtained from Pubchem.43