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. 2020 Mar 23;5(13):7537–7544. doi: 10.1021/acsomega.0c00352

Table 1. Top Compounds with Stronger Binding Affinities with the FosX Protein than Fosfomycina.

name score Hbond Hphob VwInt Eintl Dsolv SolEl mfScore dTSsc x log P3-AA solubility
chicoric acid –22.0132 –5.89096 –3.48015 –19.7111 0.516713 16.0599 –0.6382 –42.8735 1.776343 2 NA
marein –21.2412 –19.7007 –4.36088 –34.2541 19.88202 44.29087 25.80296 –95.8018 1.96109 0.7 NA
caffieic acid –21.1092 –7.84353 –2.36317 –19.0568 1.295344 12.20363 13.40166 –82.837 1.221385 1.2 1 mg/mL
N-carbamimidoyl-2-(2,6-dichlorophenyl)acetamide –19.6856 –5.75583 –2.79432 –16.2979 0 12.17383 3.206563 –18.1895 0.507306 2.2 NA
chlorogenic acid –17.9415 –13.4456 –3.72354 –23.0387 17.36799 21.76005 17.98263 –148.516 1.791441 –0.4 40 mg/mL
2′,5′-dihydroxy-4-methoxychalcone –15.8542 –5.88801 –4.98774 –29.9978 1.992762 17.59366 27.25938 –24.5201 1.427804 3.5 NA
4,2′,5′-trihydroxychalcone –14.5402 –5.80241 –4.17045 –27.9698 2.67159 18.61023 23.24728 –12.7586 1.333933 3.2 NA
plumbagin –13.577 –8.81215 –3.17567 –9.75784 2.856866 14.22039 12.46037 –102.235 1.45787 2.3 NA
l-mimosine –12.9844 –10.075 –2.20455 –16.8497 0.878521 19.13007 20.54147 –102.074 1.560315 –3.5 slightly soluble in water
fosfomycin 1.3945 –3.67585 –1.54743 –6.8822 0.186757 14.94213 8.325324 –41.929 1.229387    
a

Note: the score of each ligand indicates the ligand–receptor binding affinity (the lower the better). Other scores evaluate various energies between the ligand and protein, e.g., hydrogen bond energy (Hbond), hydrophobic energy in exposing a surface to water (Hphob), van der Waals interaction energy (VwInt), internal conformation energy of the ligand (Eintl), desolvation of exposed H-bond donors and acceptors (Dsolv), solvation electrostatics energy change upon binding (SolEl), loss of entropy (dTSsc), and potential of mean force score (mfScore).42x log P3-AA values and solubility were obtained from Pubchem.43