Table 4. Binding Sites and Docking Scores of Emodin and Alaternin along with Reference Compounds in the Modeled Human Vasopressin V1A Receptor (hV1AR).
compounds | binding energy (kcal/mol) | no. of H-bonds | H-bond interaction residues | nonpolar interacting residues |
---|---|---|---|---|
AVPa (agonist) | –9.14 | 5 | Asp202, Glu54, Asp112, Ile330 | Trp204, Ile330, Ala101, Ala334, Val132, Met135 |
SR49059a (antagonist) | –8.98 | 5 | Gln131, Gln108, Lys128 | Phe307, Trp204, Val132, Met135, Met220, Ala334, Ala205, Gln131, Thr333 |
emodin | –6.36 | 4 | Met135, Gln131, Ala101, Gly337 | Val100, Ala101, Ala334, Phe307, Trp304, Met135 |
alaternin | –6.40 | 5 | Lys128, Gln131, Ser213, Val217, Gln311 | Lys128, Met135, Met220, Phe189, Ala205 |
Arginine vasopressin (AVP) and (2S)1-{(2R,3S)-5-chloro-3-(2-chloro-phenyl)-1-(3,4-dimethoxybenzene-sulfonyl)-3-hydroxy-2,3-dihydro-1H-indole-2-carbonyl}pyrrolidine-2-carboxamide (SR49059) were used as reference ligands.