Table 5. The performance of P2Rank on the 17 proteins of the extra testing set A and B.

It was observed at least one near-native pocket among all the prediction, the near native pocket often ranks top (in this test all are rank top 1). However, there are still some cases where the near-native is not in the predicted pocket decoys.

Protein	Number of predicted Pocket	Near-native pocket
5OVE	9	None
6J4H	31	6J4H_poc1
6E3T	21	6E3T_poc1
6K04	1	6K04_poc1
6F83	3	None
6GEV	5	6GEV_poc1
6PSJ	5	6PSJ_poc1
6GGG	9	6GGG_poc1
6I2A	7	None
6I53	6	None
6IEZ	5	6IEZ_poc1
6J0O	10	6J0O_poc1
6J5W	45	None
6SJM	3	6SJM_poc1
6J8V	27	None
6MT8	7	6MT8_poc1
6NQ0	26	None