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. 2020 Apr 9;15(4):e0230587. doi: 10.1371/journal.pone.0230587

Table 3. Top-ranked gene-phenotype-MOI relations reported by phenogenon.

Gene Gene Description Predicted HPO Predicted MOI Known MOI HGF score Known
RRAGA Encodes Ras-related GTP-binding protein A that activates Mtorc [22], which regulates skin morphogenesis and epidermal barrier formation [23]. Abnormality of the skin dominant / 11.43 No
SRD5A3 Steroid 5α-reductase type 3 is known to cause congenital disorders of glycosylation, which may involve retinal disorders [20]. Abnormal full-field electroretinogram recessive recessive 11.13 Yes
AIP Known to cause pituitary adenoma [24] Dementia recessive / 11.03 No
NUP205 NUP205 encodes a nucleoporin, known to cause steroid-resistant nephrotic syndrome [25]. Abnormal electroretinogram recessive / 10.98 No
GRHL2 Transcription factor involved in multiple cancers and keratin development [19,26], Nail dystrophy recessive recessive 10.54 Yes
STAT1 Gain of function variants in this transcription factor exhibit diverse immune dysfunction [27,28] Severe combined immunodeficiency dominant dominant/recessive 10.38 Yes
TTN Involved in cardiomyopathy [29]. Very large gene prone to artefacts [30]. Abnormality of the anterior segment of the globe dominant / 9.74 No
PDE6A PDE6A expresses in cells of the retinal rod outer segment, and is known to cause retinitis pigmentosa [21]. Retinal dystrophy recessive recessive 9.40 Yes