Table 3.

Evolutionarily conserved chimeras with matched 3D chromatin contact maps in APP, CTBP1 and EEF2 genes

Chimera_ID	Gene_ID	Gene	Chr	Transcript	Version	Type_junction
CO189450	31002	Appl	X	NM_001258523.2	dm6	exon–exon
CO190034	31002	Appl	X	NM_001258523.2	dm6	exon–exon
EC057845	31002	Appl	X	NM_001258523.2	dm6	exon–exon
EC060998	41602	CtBP	3R	NM_169491.2	dm6	exon–exon
EC240401	41602	CtBP	3R	NM_001275593.1	dm6	exon–exon
EC249196	35422	EF2	2L	NM_080366.3	dm6	exon–exon
AA212584	11820	App	16	NM_001198823.1	mm10	exon–exon
BU613605	11820	App	16	NM_001198823.1	mm10	exon–exon
BE569735	13017	Ctbp2	7	XM_006507308.3	mm10	exon–intron
CN678615	13629	Eef2	10	NM_007907.2	mm10	exon–exon
BE142898	351	APP	21	NM_000484.3	hg38	exon–exon
BE819323	351	APP	21	NM_000484.3	hg38	exon–intron
BF330219	351	APP	21	NM_000484.3	hg38	exon–intron
EC528075	351	APP	21	NM_000484.3	hg38	exon–exon
EC572306	351	APP	21	NM_000484.3	hg38	exon–exon
AA506318	1487	CTBP1	4	XM_005272263.5	hg38	exon–exon
AW890211	1487	CTBP1	4	XM_005272263.5	hg38	exon–exon
AI075687	1938	EEF2	19	NM_001961.3	hg38	exon–exon
BE173877	1938	EEF2	19	NM_001961.3	hg38	exon–exon
BE763496	1938	EEF2	19	NM_001961.3	hg38	exon–exon
BF761203	1938	EEF2	19	NM_001961.3	hg38	exon–exon
BF801948	1938	EEF2	19	NM_001961.3	hg38	exon–exon
BF927334	1938	EEF2	19	NM_001961.3	hg38	exon–exon
BQ347823	1938	EEF2	19	NM_001961.3	hg38	exon–exon
BQ349979	1938	EEF2	19	NM_001961.3	hg38	exon–exon
CD580061	1938	EEF2	19	NA	hg19	intron-intron
CN263823	1938	EEF2	19	NM_001961.3	hg38	exon–exon
CN271708	1938	EEF2	19	NM_001961.3	hg38	exon–exon
EC450536	1938	EEF2	19	NM_001961.3	hg38	exon–exon